Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53290 466 / 1e-165 Galactosyltransferase family protein (.1) AT3G14960 462 / 3e-164 Galactosyltransferase family protein (.1) AT2G26100 399 / 3e-139 Galactosyltransferase family protein (.1) AT1G11730 186 / 8e-56 Galactosyltransferase family protein (.1) AT1G32930 183 / 2e-54 Galactosyltransferase family protein (.1) AT1G77810 179 / 4e-53 Galactosyltransferase family protein (.1.2) AT1G05170 180 / 5e-53 Galactosyltransferase family protein (.1.2) AT4G26940 176 / 1e-51 Galactosyltransferase family protein (.1.2) AT1G33430 174 / 5e-51 Galactosyltransferase family protein (.1.2) AT1G22015 172 / 5e-50 DD46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017943 [exp] 431 / 9e-153 AT1G53290 328 / 2e-112 Galactosyltransferase family protein (.1) Lus10014451 [exp] 333 / 4e-113 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10023955 [exp] 332 / 1e-112 AT2G26100 441 / 3e-155 Galactosyltransferase family protein (.1) Lus10040062 [exp] 188 / 5e-56 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 187 / 8e-56 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 184 / 7e-55 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10020042 [exp] 182 / 1e-54 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 183 / 2e-54 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 183 / 4e-54 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G392700 [exp] 491 / 2e-175 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 489 / 1e-174 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) Potri.006G228900 [exp] 397 / 4e-138 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.018G053150 [exp] 256 / 2e-83 AT2G26100 315 / 2e-106 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 185 / 4e-55 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 182 / 6e-54 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 182 / 8e-54 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 179 / 9e-53 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 179 / 2e-52 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 178 / 2e-52 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013683 pacid=23169122 polypeptide=Lus10013683 locus=Lus10013683.g ID=Lus10013683.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAATCTTTCAACTCACGGCCATTTGCATCCCCCGCTTCTCGCAGATCGACTACCTTCGTTGTCATCGTATCTATCTGCATAGGAATCTCCG GCTTCCTCTTCGGCCTCACCGCGCTTTTCATTTCTCCTTCTTCTCGCCGCTGCGGTGCCCCTCGATCGGTGAAGGTCTCGTGGGACACCAATCCCGTCAC TACTGAACTGAAATCAGACGGAGGAGGAGGCCTCCTTCTTGACGGGGAGAGAACCAGGCACAAAGTTATGGGGTTCGTAGGGATTCAGACTGGTTTCGAC TCTTCAGGTCGGAGGCGGTCGCTCAGGAAGACGTGGATGCCGTCCGATCTCCAAGGACTTCAACGATTGGAAGAGTCTACCGGTTTAGCTTTTAGGTTTG TGATTGGTAAAAGTAAGGATAAAAGGAAGATGGCAGAGCTTCAGGAGGAGGTTGAAGCTTATGATGATTTCTTGCTGCTAGATATTGAGGAACAGTACAG TAAGCTTCCTTATAAAACATTGGCATTCTTCAAGGCTGCATATGCACTCTTCGATTCCGAGTTTTACGTGAAGGTGGATGATGACATTTATTTGAGACCT GATCGTCTCTCGACACTGCTAGCTAAAGAGCGGCCTAATTCTAGGACGTATCTTGGCTGCATGAAGAAGGGACCAGTTTTTGGTGATCCGAAACTCAAGT GGTACGAGCCACTCCACTATATGCTAGGAAAGGAGTATTTTCTCCATGCTTACGGTCCATTGTACGCTCTTTCAGCTGACGTTGTCACAAGTTTGGCTGC TATTAGAAACGACAGTTTTAGGATGTTTAGCAATGAGGATGTGACAATCGGATCATGGATGCTGGCCATGAACGTTAATCACGAAGACAACCGAGAACTT TGTGCATCAGATTGTAGTCCAATTTCGATCTCCATATGGGATATTCCCAAGTGTTCAGGCTTATGCAACCCGGAGAAACGATTACTGGAACTGCACAGCA AGGAGGACTGCTCGAAGACACCAACTATCATGTCTGACGATGATTAA
AA sequence Show only first row Show all	>Lus10013683 pacid=23169122 polypeptide=Lus10013683 locus=Lus10013683.g ID=Lus10013683.BGIv1.0 annot-version=v1.0 MASKSFNSRPFASPASRRSTTFVVIVSICIGISGFLFGLTALFISPSSRRCGAPRSVKVSWDTNPVTTELKSDGGGGLLLDGERTRHKVMGFVGIQTGFD SSGRRRSLRKTWMPSDLQGLQRLEESTGLAFRFVIGKSKDKRKMAELQEEVEAYDDFLLLDIEEQYSKLPYKTLAFFKAAYALFDSEFYVKVDDDIYLRP DRLSTLLAKERPNSRTYLGCMKKGPVFGDPKLKWYEPLHYMLGKEYFLHAYGPLYALSADVVTSLAAIRNDSFRMFSNEDVTIGSWMLAMNVNHEDNREL CASDCSPISISIWDIPKCSGLCNPEKRLLELHSKEDCSKTPTIMSDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	2.4	0.8174
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	2.6	0.8235
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	3.7	0.8205
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	5.5	0.8151
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	11.2	0.7691
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	13.0	0.8164
AT3G49720			unknown protein		Lus10039648 [exp]	13.7	0.8106
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	15.7	0.7927
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	16.5	0.7777
AT1G35780			unknown protein		Lus10033456 [exp]	17.4	0.7742

Compare expression of checked genes

Lus10013683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.