Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18380 382 / 7e-133 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) AT1G15215 173 / 4e-52 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017944 [exp] 633 / 0 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10038276 [exp] 168 / 1e-49 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10025826 [exp] 133 / 2e-36 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 132 / 9e-36 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10005480 [exp] 100 / 2e-25 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 90 / 5e-21 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097500 [exp] 438 / 5e-155 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 436 / 2e-153 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.018G046200 [exp] 181 / 3e-55 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.001G189200 [exp] 157 / 2e-46 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10013684 pacid=23169152 polypeptide=Lus10013684 locus=Lus10013684.g ID=Lus10013684.BGIv1.0 annot-version=v1.0 ATGGGTCGGCCACCTAGCAACGGTGGCCCTGCCTTTCGCTTCTCGCAAAACGAGGTTGCAGAGATGGAAGCGATTCTGCAACAGTACAAGCAAGTAATGC CGTCTCGTGAAGTTCTAGTAGCTATTGCAGATAAGTTCAGTGAATCTCCCGACCGAAAAGGGAAGATTTCCGTGCAAATGAAACAGGTGTGGAACTGGTT CCAAAACAGGCGTTATGCAATAAGGGCCAAATCAAGCAAGGTTCCTGCAAAGTTAAGTATAACACAAGTGCCTCGGGATGATACGAATACAGTTAGAAAT GCACCGCATCCAGTAGCTCCTCCTGCATTCATACATGCACCTACTAACATAGCCGCTCCTTCAGGAAGGATGACTCCAGAAAATTCGTACATGGAATTTG AAGCCAAATCTGGAAGAGATGGTGCATGGTATGATGTTGGCACGTTCATGTCTCATAGATACCTGGACAAGGGCGATCCGGACGTATTGGTTAGGTTTTC CGGTTTCGGACCGGACGAAGATGAGTGGATCAATGTTCGCAAGAATGTAAGGCAGCGTTCCCTCCCTTGTGAAGCATCGGAATGCGTTGCAGTTCTTCCT GGAGACCTCATACTATGTTTCCAGGAAGGCAAAGATCAAGCATTATACTTTGATGCACATGTACTTGATGCTCAAAGAAGACGGCACGATGTAAGAGGTT GCCGATGTAGATTTTTGGTGCGTTATGATCATGATCAATCTGAGGAAATCGTGCCTCTGAGAAAAGTTTGCCGAAGGCCAGAGACCGATTACCGGTTGCA GCAACTTCATGCAGCATTGGAATCCACAAGTCAAGAGCAGCCGAAGTCTGGTACAGCCGAAAGGGTATCTACTGCCTCTGCTAATGCAGAAACCATGCCG AAGCAACGAAGCCTCGACTCAATCATGTCGGTGCCAAAAGCCCCGGAAAGTAGCACCAGTGTGGCCGGAAATGTAGGGGCTATTGCCCCCGGGGTCATTG CTGTTCGTAGTAGTATTGCTCCCAGCAGTTCCAGTTAG
AA sequence Show only first row Show all	>Lus10013684 pacid=23169152 polypeptide=Lus10013684 locus=Lus10013684.g ID=Lus10013684.BGIv1.0 annot-version=v1.0 MGRPPSNGGPAFRFSQNEVAEMEAILQQYKQVMPSREVLVAIADKFSESPDRKGKISVQMKQVWNWFQNRRYAIRAKSSKVPAKLSITQVPRDDTNTVRN APHPVAPPAFIHAPTNIAAPSGRMTPENSYMEFEAKSGRDGAWYDVGTFMSHRYLDKGDPDVLVRFSGFGPDEDEWINVRKNVRQRSLPCEASECVAVLP GDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAALESTSQEQPKSGTAERVSTASANAETMP KQRSLDSIMSVPKAPESSTSVAGNVGAIAPGVIAVRSSIAPSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	0	1
AT1G73350			unknown protein		Lus10042294 [exp]	4.8	0.8634
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	5.3	0.8624
AT5G08320			unknown protein		Lus10010178 [exp]	5.5	0.8297
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	6.7	0.8486
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	6.9	0.8470
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	6.9	0.8016
AT5G51170			unknown protein		Lus10035151 [exp]	7.7	0.8450
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	9.2	0.8408
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	10.5	0.8058
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10021868 [exp]	10.9	0.7628

Compare expression of checked genes

Lus10013684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.