Plant FIBer expression Database

Lus10013685 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59490 325 / 5e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G028900
[exp]
383 / 1e-134 AT3G59490 330 / 1e-113 unknown protein
PFAM info
Representative CDS sequence
>Lus10013685 pacid=23169079 polypeptide=Lus10013685 locus=Lus10013685.g ID=Lus10013685.BGIv1.0 annot-version=v1.0
ATGGCATTCCAAGGGACTGAAGAAGCGCTACAGGTCTTGAATTCTTCTGTTTCCCAACTCAAATGGCGTCTTAGATCACCAGCCAGGCGCCGCCTTGAGA
TAGACGTTCTTGCATTATTGACAGAGATGAGGCCAGTTATAATGGTGGATTACGGAGGGAAGATGCCTGAATTGCAGGAACGCCTTTGTGCGCTTATCGA
ACTCTGCCAAAAGGAGTCGGCTGTTTTCCAGTGCCTAAGAGTCATGGTTGTGGAAGATATGATATATTTGATACACTTTAAAGGACTTGCTGAGTATGCC
ATGGCGAGCTTGAACTCCGAAGTAGAATTCGTTTTCGTCAACCTAGAGCGAGATCCACCAGAGATGGTTTCACAAACACAAAATTGCTCCCTAGGAGCTG
AGTTCTTGAGAGTGATGAAGATGTTCTCACTACTTTCTTCCCATGATGAAGTGGAAGATAATGTTACCGATGGAAAACTTTCTACCAGCAGTAATCCTAG
CACCTCGTTTCCTGCTGGACTAGTTGATCTTAGCAGTTGCATGCAAGAAACACAGATCACTGTGCCTACTTTAAACGGGTGGCTTCTTGGTTATCCCGTA
GTGTATATGTTCGGCAAGGAGTTCATTTCAGATGCAATATGCAATCTGTCGACAAAGTATCTACGTCTCTTCAGAATCTTAGTCCGCCGAGGGAATGCAG
CAGCTGGTAAAGGATCTCAACCTGAAGAGCTAATGAGCTTTTCGGTGCCATACGAGCTGAGCATGAGAGGAAGGAAAGAGGAATGGGCAGAGGCATTTTT
AGAGAGATTGCAGAGCAAGTGGGAGAAGTGCAAGCAAACTTGGGTGTCTTTGGAAATGGTGGTGGAAGAGTGTCACCCACAAGCTATAGTGTTGTAG
AA sequence
>Lus10013685 pacid=23169079 polypeptide=Lus10013685 locus=Lus10013685.g ID=Lus10013685.BGIv1.0 annot-version=v1.0
MAFQGTEEALQVLNSSVSQLKWRLRSPARRRLEIDVLALLTEMRPVIMVDYGGKMPELQERLCALIELCQKESAVFQCLRVMVVEDMIYLIHFKGLAEYA
MASLNSEVEFVFVNLERDPPEMVSQTQNCSLGAEFLRVMKMFSLLSSHDEVEDNVTDGKLSTSSNPSTSFPAGLVDLSSCMQETQITVPTLNGWLLGYPV
VYMFGKEFISDAICNLSTKYLRLFRILVRRGNAAAGKGSQPEELMSFSVPYELSMRGRKEEWAEAFLERLQSKWEKCKQTWVSLEMVVEECHPQAIVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59490 unknown protein Lus10013685
[exp]
0 1
AT5G17620 unknown protein Lus10001340
[exp]
3.3 0.8206
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Lus10021994
[exp]
9.5 0.7930
AT1G72175 RING/U-box protein with domain... Lus10009529
[exp]
12.8 0.7787
AT5G41790 CIP1 COP1-interactive protein 1 (.1... Lus10032362
[exp]
18.5 0.7208
AT1G68910 WIT2 WPP domain-interacting protein... Lus10013053
[exp]
19.1 0.7844
AT1G03590 Protein phosphatase 2C family ... Lus10031631
[exp]
19.9 0.7726
AT2G27790 RNA-binding (RRM/RBD/RNP motif... Lus10030890
[exp]
22.2 0.7091
AT5G17620 unknown protein Lus10013643
[exp]
24.7 0.7676
AT3G07750 3'-5'-exoribonuclease family p... Lus10006382
[exp]
25.1 0.7509
AT1G16570 UDP-Glycosyltransferase superf... Lus10026065
[exp]
25.3 0.7471

Lus10013685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.