Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017946 [exp] 204 / 5e-67 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013687 pacid=23169054 polypeptide=Lus10013687 locus=Lus10013687.g ID=Lus10013687.BGIv1.0 annot-version=v1.0 ATGTTCAATTTGTGGGTTTCGGCACTTTTGATTGGCAGAGATGGGAGCTTAGGTTGGAATGTGACATGGCAACCCGAGTCAAGGAGAGCAATAAGAGATG ACAATGGAACAACAATTGCTACTACATTCCCAACACAGTTCCTTACTTTGGGTCCTCCTGCAGTTACTCCAACAACAGCAGGACGACAAGTCTCGGATTC GAGGCTGATGCTAAAGCATCCACATTTTCATCATCGTAGTAGTACCACCAAAATGCTCGAGCTCGATCCCTCAAGCCATAGCCATCACCATCATCACCTC CATCATCAAGGTGGTGAAATGGAAGACGAAGCTGCAGGTGACCATCAACAACAGGGAGTTTGCCATGCCGGCGGCTTATTCTTGCAGCAGAAATTCATGC AAGACGAAACAACCAAAGAAAATGTCGTCGACCTCAACTTGAAGTTATGA
AA sequence Show only first row Show all	>Lus10013687 pacid=23169054 polypeptide=Lus10013687 locus=Lus10013687.g ID=Lus10013687.BGIv1.0 annot-version=v1.0 MFNLWVSALLIGRDGSLGWNVTWQPESRRAIRDDNGTTIATTFPTQFLTLGPPAVTPTTAGRQVSDSRLMLKHPHFHHRSSTTKMLELDPSSHSHHHHHL HHQGGEMEDEAAGDHQQQGVCHAGGLFLQQKFMQDETTKENVVDLNLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013687 [exp]	0	1
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	3.0	0.7687
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	18.2	0.7349
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	18.6	0.7401
AT5G46940			Plant invertase/pectin methyle...		Lus10043346 [exp]	19.0	0.6911
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	23.9	0.7346
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	27.3	0.7187
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Lus10038883 [exp]	31.5	0.6741
					Lus10043115 [exp]	32.5	0.6594
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	45.7	0.7010
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	46.5	0.6852

Compare expression of checked genes

Lus10013687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.