Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017946 [exp] 135 / 5e-38 ND / Lus10042849 [exp] 57 / 1e-08 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028146 [exp] 45 / 8e-05 ND 41 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013688 pacid=23169061 polypeptide=Lus10013688 locus=Lus10013688.g ID=Lus10013688.BGIv1.0 annot-version=v1.0 ATGGGTAGTAATAATAATGATAGTAGCAGCCATGGGAGGTGCTCGAAGAAGCAGAAGCAGAAACAGAGAATTCCGCAGAGAGGGCTAGGAGTGGCTCAGT TGGAAAGGATAAGGCTGGAGGAGCAACACCATCATCATCAGAAGAAAGACCAACACCACGTCCACGGTGGTTTATCCTCCACCTCCTCCGCCGGATCCAT GGCGGCGACGGCGATGACGTCATTATCGTCGATTTCCAATGGGCAGTCCTCAAATTTCTCCACTTTCCACCAATCGTGGCAGAAGAGCTCGAGACATGGT ATTCACAGTTTGCACACTAGCTTCCACCGCTACCGAAAGAGCAGTAATTACGATGATTACAGTGTCGCCGGGGGAAGTGTTGATCAGAAGGATACGGTGA GCTGCTCCGGCGAGGGTATATTCCCGTTCTGGGGACGATCTTCCTCATCGGGTAGCTCCAGTCTACCAACAGAATCGAACCCGAACCCAATTCGGCCGGT TCAGAGAGCGCACCACCATCAACATGAGGAAGAGATCAAGAAAATGTTTGTGATAAATGAAGTGCGTACATATTTGCAGATGAATCATGCGACGAATTCT TCTTCGTCATCATCGACGGTGATAAATTTCTACCAGATGGAGCTCCCTTCAAACCAAAGCTTTTACAGCAACTTCTCCGGCTACGGCGGCTGGGCGGCGG CGGCGGAGGAGGAGAAGACGGTTGGGATGAAGAGATCACATCCACTCTCCCAGCAGGATAGCACTAGCGTTAACGGCGGCGGCAGCGGTGGCGGGAGCCT TGCTCTTCCTCCCCCTCCTCCATCGTTTATGTACCAAAGCAACAGTAGTAGCGTGAACAAGCAACAATACCCGTCGGTAGTTCATCACCATCATCACCAT GAATCTCGTCGCTCCTTCAATTTTGGGTCCGGACCTGTCTTCAACTTCTCTTCCTCCAATCCGCCATAA
AA sequence Show only first row Show all	>Lus10013688 pacid=23169061 polypeptide=Lus10013688 locus=Lus10013688.g ID=Lus10013688.BGIv1.0 annot-version=v1.0 MGSNNNDSSSHGRCSKKQKQKQRIPQRGLGVAQLERIRLEEQHHHHQKKDQHHVHGGLSSTSSAGSMAATAMTSLSSISNGQSSNFSTFHQSWQKSSRHG IHSLHTSFHRYRKSSNYDDYSVAGGSVDQKDTVSCSGEGIFPFWGRSSSSGSSSLPTESNPNPIRPVQRAHHHQHEEEIKKMFVINEVRTYLQMNHATNS SSSSSTVINFYQMELPSNQSFYSNFSGYGGWAAAAEEEKTVGMKRSHPLSQQDSTSVNGGGSGGGSLALPPPPPSFMYQSNSSSVNKQQYPSVVHHHHHH ESRRSFNFGSGPVFNFSSSNPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29010			unknown protein		Lus10013688 [exp]	0	1
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10011894 [exp]	1.0	0.9839
					Lus10002921 [exp]	12.6	0.9506
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10026398 [exp]	14.4	0.9029
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	18.5	0.9666
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	22.8	0.9577
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	27.1	0.9573
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	30.7	0.9532
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	32.2	0.9527
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	36.5	0.9527
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	39.0	0.9521

Compare expression of checked genes

Lus10013688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.