Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15150 52 / 1e-07 MATE efflux family protein (.1) AT1G15180 50 / 6e-07 MATE efflux family protein (.1.2) AT1G15170 49 / 2e-06 MATE efflux family protein (.1) AT1G73700 48 / 4e-06 MATE efflux family protein (.1) AT1G15160 46 / 1e-05 MATE efflux family protein (.1) AT1G71140 46 / 2e-05 MATE efflux family protein (.1) AT1G64820 45 / 3e-05 MATE efflux family protein (.1) AT2G04100 45 / 3e-05 MATE efflux family protein (.1) AT2G04090 42 / 0.0003 MATE efflux family protein (.1) AT5G52450 42 / 0.0005 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019470 [exp] 93 / 4e-21 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10019492 [exp] 68 / 1e-12 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10005557 [exp] 56 / 3e-09 AT4G31470 199 / 2e-65 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) Lus10006979 [exp] 57 / 5e-09 AT1G13120 479 / 1e-157 embryo defective 1745 (.1) Lus10029668 [exp] 57 / 7e-09 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10001318 [exp] 57 / 8e-09 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10028540 [exp] 54 / 5e-08 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 54 / 6e-08 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 53 / 1e-07 AT1G71140 528 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 60 / 5e-10 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G171240 [exp] 56 / 1e-08 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 56 / 1e-08 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 52 / 2e-07 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 48 / 5e-06 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 46 / 2e-05 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 45 / 4e-05 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.011G117300 [exp] 42 / 0.0003 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117100 [exp] 42 / 0.0004 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.017G120400 [exp] 40 / 0.001 AT2G04100 508 / 3e-178 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013690 pacid=23169093 polypeptide=Lus10013690 locus=Lus10013690.g ID=Lus10013690.BGIv1.0 annot-version=v1.0 ATGTCTACACTTAGCATCCTCTTCCCTTGCCTCTCCTCCTCTGCCTCCTCTGCCCGACTGCCTCACTCTCCCTTCCTCCGCACTTCCCCGACGAACGGCC GGCCGGAGAAGAACCACCGCCAACACTCCACCCAACATAGTGAAGCAGTTTCTATCCCCACACAACAGAGAGCGAGCCAGGCTAGGGCAGCCACAATAAG AAAACCTGGCGAGCGTAATTCTGTCTCGTATGGATTTCCAACCTTTGTAGACGCACTTGAACTTCATCAGCGACTTCGATGGCAGCTTGGCATGAATGGC AACGGACGACGACGACGACGCTCCGGCATTCTCGTATTGAAACCTCAATTTGGGGAATCTGGAATGGAGATTTGGATCGGGATCGGGATTTCGGGGGAGG TGAAAAGTCGAGAAAGGAATTACAAAGGGACAGGGGCGGAGCCAGGTCATAGCCGGGAGGGGACATGGCCCTCTCCGGCAGCCGGCGACGGAATATTGTT TTCGAGTTTTCGAGCCCGTGTCAGGATACATGGAAAGGTTTCAGCTTTAAGGGTGCCAGTCCTAAAGGTTTTCATTGTACTGGCGGGGCTCCTTCCTGAC TCAGAGTTGGAGACTTCAATGATGTTGATCAGCCTCAACACTTCCGCGGCAGTCTTCAGGATCCCCATGAGCCTCGGCAGCGCCGTAAGATTCATTCGAA TTTCGAACGAGCTTGGAGCAGGGCGTCTAGCAGTGCGAGTCATGCTGCTTCTGGCTGTGATCGCAACCGCGGCACGCCACGTGTGGGGTTGTATATACTC CAATGACCCGATTTTGATCAAGTACTTGGCCGTGATTGCCCCGAAAAAATGTGGATGA
AA sequence Show only first row Show all	>Lus10013690 pacid=23169093 polypeptide=Lus10013690 locus=Lus10013690.g ID=Lus10013690.BGIv1.0 annot-version=v1.0 MSTLSILFPCLSSSASSARLPHSPFLRTSPTNGRPEKNHRQHSTQHSEAVSIPTQQRASQARAATIRKPGERNSVSYGFPTFVDALELHQRLRWQLGMNG NGRRRRRSGILVLKPQFGESGMEIWIGIGISGEVKSRERNYKGTGAEPGHSREGTWPSPAAGDGILFSSFRARVRIHGKVSALRVPVLKVFIVLAGLLPD SELETSMMLISLNTSAAVFRIPMSLGSAVRFIRISNELGAGRLAVRVMLLLAVIATAARHVWGCIYSNDPILIKYLAVIAPKKCG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15150			MATE efflux family protein (.1...		Lus10013690 [exp]	0	1
					Lus10011832 [exp]	3.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	4.9	1.0000
					Lus10027689 [exp]	6.6	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	6.7	1.0000
					Lus10027991 [exp]	12.4	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	14.1	1.0000
					Lus10009727 [exp]	14.1	1.0000
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	16.9	1.0000
					Lus10003536 [exp]	17.0	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	18.7	1.0000

Compare expression of checked genes

Lus10013690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.