Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78620 375 / 1e-130 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005554 [exp] 539 / 0 AT1G78620 410 / 3e-144 Protein of unknown function DUF92, transmembrane (.1.2) Lus10038149 [exp] 360 / 7e-126 AT1G78620 349 / 1e-121 Protein of unknown function DUF92, transmembrane (.1.2) Lus10042501 [exp] 310 / 2e-106 AT1G78620 306 / 3e-105 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105700 [exp] 404 / 5e-142 AT1G78620 392 / 7e-137 Protein of unknown function DUF92, transmembrane (.1.2) Potri.001G384300 [exp] 397 / 2e-139 AT1G78620 416 / 1e-146 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10013691 pacid=23169096 polypeptide=Lus10013691 locus=Lus10013691.g ID=Lus10013691.BGIv1.0 annot-version=v1.0 ATGGCGCAGTCCACACTTCTGTGCATCAATCAATCTTCTTCCATTCTCCTCCTCCATCTCAATTCCCCCAAACCCACCGCCGCCGTAATCAAACACTCCT CCTTCTTAATCCCTCGCCTCACCTCAAGAACAACCCTCCTTCACCGACCTAAAGCGTTCTCGATGCTGCAATCCGTCGTACCAGAAGCCATCGCCGTGCT CCAATCTCCCGTCCCGACCTGGGAATCCGCTCTCCTCAACAATCTCTTGATTTTCACCCTCGGCTCTCCGATTCTCGTCTCCGGCCTCTCCTTCCCCGGC ATTTCCGCGGCTTTCCTGCTCGGAACCCTCACATGGCGCGCTTTTGGCGCCTTCGGATTCCTTCTCGTCGCAGCTTACTTTGTCATGGGAACTGCAGTTA CGAAGGTGAAAATGGCGGAGAAGGAAGCTCAGGGAGTTGCTGAGAAGAGGAAAGGGAGAAGAGGACCTGGAAGCGTGATTGGTTCCAGCACTGCTGGATG TGTTTGTGCTCTCTTGTCAATATATGGAGTTGGTGGAGAAGGGTTCTCTCAGCTTTGGTTGATTGGATTCGTTGCTAGTTTCTGTACCAAGTTGAATGAT ACTGCTTCCAGTGAGATTGGCAAGGCTTATGGCAAAACTACGTACCTTGCTACCACATTTAAGGTTGTTCCTAGGGGAACAGAAGGGGCTGTGAGCGTTG AAGGAACTTTAGCTGGATTTCTCGCAGCCATTGTTCTTGCCTCGATTAGCTGTCTGATGGGTCAGATAGATGAAAGTGAAGCAGTGATATGTGTGATAGC CTCCCAGATTGCAAACTTCGGGGAGAGCTTGATAGGTGCAGTGTTTCAAGAGAAGGATGGATTTGGCTGGCTTAACAACGATGCGGTGAATGTAATTAAC ATATCAATTGGGAGCATATTAGCAGTTGCAATGCAGCAAGCATTGCTTCAAAACTGGGGAACATCATGA
AA sequence Show only first row Show all	>Lus10013691 pacid=23169096 polypeptide=Lus10013691 locus=Lus10013691.g ID=Lus10013691.BGIv1.0 annot-version=v1.0 MAQSTLLCINQSSSILLLHLNSPKPTAAVIKHSSFLIPRLTSRTTLLHRPKAFSMLQSVVPEAIAVLQSPVPTWESALLNNLLIFTLGSPILVSGLSFPG ISAAFLLGTLTWRAFGAFGFLLVAAYFVMGTAVTKVKMAEKEAQGVAEKRKGRRGPGSVIGSSTAGCVCALLSIYGVGGEGFSQLWLIGFVASFCTKLND TASSEIGKAYGKTTYLATTFKVVPRGTEGAVSVEGTLAGFLAAIVLASISCLMGQIDESEAVICVIASQIANFGESLIGAVFQEKDGFGWLNNDAVNVIN ISIGSILAVAMQQALLQNWGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78620			Protein of unknown function DU...		Lus10013691 [exp]	0	1
AT1G08530			unknown protein		Lus10042523 [exp]	1.0	0.8008
AT2G33250			unknown protein		Lus10023703 [exp]	8.0	0.7741
AT4G32915			unknown protein		Lus10006882 [exp]	16.4	0.7535
AT3G52155			Phosphoglycerate mutase family...		Lus10023521 [exp]	32.6	0.7299
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	32.7	0.7408
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	38.3	0.6782
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	38.5	0.6933
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	43.2	0.7588
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	62.3	0.6770
AT5G12000			Protein kinase protein with ad...		Lus10008466 [exp]	73.2	0.7087

Compare expression of checked genes

Lus10013691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.