Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14810 486 / 3e-166 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 475 / 6e-162 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17010 472 / 8e-162 Mechanosensitive ion channel family protein (.1) AT1G78610 473 / 3e-161 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 434 / 2e-146 Mechanosensitive ion channel family protein (.1) AT5G12080 322 / 5e-104 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 295 / 7e-94 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005556 [exp] 707 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 585 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 577 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10023990 [exp] 459 / 3e-158 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 453 / 6e-153 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 448 / 3e-146 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012515 [exp] 409 / 2e-143 AT1G78610 421 / 1e-141 mechanosensitive channel of small conductance-like 6 (.1) Lus10004153 [exp] 389 / 3e-124 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10036586 [exp] 328 / 2e-106 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105500 [exp] 580 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 574 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 472 / 3e-160 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 431 / 5e-145 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 343 / 1e-111 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 339 / 4e-110 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 325 / 1e-105 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 321 / 7e-104 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10013692 pacid=23169083 polypeptide=Lus10013692 locus=Lus10013692.g ID=Lus10013692.BGIv1.0 annot-version=v1.0 ATGAAGAGGCTGATGAACATAATCAGACGTGGAGGTTTGTCGACTCTGGATGAGCATATTAAGGAGTCTGCTCATGATGGTGACGATGAATCCACTACGA ATATCAGAAGTGAGTGTGAAGCTAAGGCTGCTGCTAGGAAAATCTTTCAAAATGTGTCCAAGCCGGGTTCGAGGTTTATTCACTTTGATGATCTTCTGCG GTTTATGCAAGAAGATGAGGCTACAAAGGCGATGAGTCTTTTCGAAGGAGCACCAGAAAGTCAAAAGATTAGCAAGACATGCTTGAAGAATTGGGTGGTC AATGCTTTCAGAGAACGAAGAGCGCTGGCTTTGAGCCTAAACGACACCAAAACAGCAGTGAACAAATTGCACCGGATGGTGAACGTTCTAGCCGCTGCAG TGATCACAATCATATGGCTTCTCATGTTGGGGATAGCCACCACCAAATTCCTGCTCTTTTTAAGCTCTCAGCTTGTTTTAGTAGCATTCATTTTCGGCAA CACTTGCAAAACCGTCTTCGAAGCGATTATATTCTTGTTCGTGATGCACCCGTTCGACGTAGGGGACCGCTGCGAAATTGACGGGGTTCAGCTGGTGGTT GAAGAGATGAACATCCTGACCACCGTTTTCCTAAGGTTCGACAACCAGAAGATAATGATCCCGAACAGTGTCCTTGCCACGAAAGCCATCGGTAACTACT ACCGCAGCCCTGACATGGGTGACGGAGTCGAGTTTTTAATCCATGTCGCCACTCCAGCTGAGAAGATTGCTGCTATCAAGCAAAGAATCAACGCATACAT CGACACCAAAAAGGACCATTGGTACTCGTCACCGATGATCATATGCATGGAGGCGGAGGATTTGAACCGGGTCCGGATGGCAGTGTGGCTGTGCCACAGG ATCAACCATCAAGACATGGTAGAGAAGTTCCTTAGAAGGTCGTTGCTGATAGAAGAGATGGTTAAGATCTTTAAAGAGCTGGACATGCAGTACCGGTTGC TTCCTGTCGACATCAACATCCGAGCATTGCCTCCCGTGTCCTCGGACCGAGTCCCGCCGAGTTGGGCAGCAGCTTGA
AA sequence Show only first row Show all	>Lus10013692 pacid=23169083 polypeptide=Lus10013692 locus=Lus10013692.g ID=Lus10013692.BGIv1.0 annot-version=v1.0 MKRLMNIIRRGGLSTLDEHIKESAHDGDDESTTNIRSECEAKAAARKIFQNVSKPGSRFIHFDDLLRFMQEDEATKAMSLFEGAPESQKISKTCLKNWVV NAFRERRALALSLNDTKTAVNKLHRMVNVLAAAVITIIWLLMLGIATTKFLLFLSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQLVV EEMNILTTVFLRFDNQKIMIPNSVLATKAIGNYYRSPDMGDGVEFLIHVATPAEKIAAIKQRINAYIDTKKDHWYSSPMIICMEAEDLNRVRMAVWLCHR INHQDMVEKFLRRSLLIEEMVKIFKELDMQYRLLPVDINIRALPPVSSDRVPPSWAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	1.4	0.8868
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	1.4	0.8983
					Lus10043150 [exp]	2.2	0.8737
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	3.6	0.8536
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	5.2	0.8865
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	6.0	0.8743
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	6.9	0.8721
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	7.5	0.8653
AT4G33170			Tetratricopeptide repeat (TPR)...		Lus10034948 [exp]	10.4	0.8227
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	11.4	0.8571

Compare expression of checked genes

Lus10013692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.