Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1458 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 1023 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 999 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 942 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT4G17770 440 / 4e-140 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G06410 421 / 6e-133 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G68020 420 / 1e-132 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G60140 405 / 1e-126 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G23870 403 / 4e-126 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 398 / 3e-124 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005559 [exp] 1785 / 0 AT1G78580 1507 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10015243 [exp] 1310 / 0 AT1G78580 1354 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005412 [exp] 1303 / 0 AT1G78580 1338 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 438 / 3e-139 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 426 / 7e-135 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10007311 [exp] 413 / 1e-129 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 412 / 2e-129 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 410 / 9e-129 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10020741 [exp] 409 / 2e-128 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103900 [exp] 1544 / 0 AT1G78580 1538 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G383600 [exp] 1535 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.004G064600 [exp] 1328 / 0 AT1G78580 1305 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.001G139500 [exp] 436 / 1e-138 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 435 / 3e-138 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.003G094500 [exp] 432 / 3e-137 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.008G136500 [exp] 425 / 1e-134 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.011G070900 [exp] 409 / 3e-128 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.012G078500 [exp] 408 / 4e-128 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 408 / 4e-128 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10013694 pacid=23169085 polypeptide=Lus10013694 locus=Lus10013694.g ID=Lus10013694.BGIv1.0 annot-version=v1.0 ATGCCTGCAAACCAGTACCACGGTAACTCAACTCCTTACCCAGGTCGTGTGGAGCGGCTCTTGAGAGAAAGAGAGCTCAGGGAGCTGAGGAGAAGCAATA GGGCTGAGGTGAATGGTAACCATAATAGAGGTGAATCAAGTGAACTAGAGTTACGCTTCAGGGAGAGTGATCTTCAGAAGAATTCCTACATTGAACAGTA CTTGGAAGAAGCTGCTGCTGCCACAAGGGCACTTAATAAAGAAGGAGGATGTGAAGGCCATGATGGGAGGCCTTTAAGGCAACGCTTACTCGTCGTAGCT AACCGGCTGCCTGTGTCTGCTGTTAGAAGAGGTGAAGATGCTTGGTCTTTGGAAATTAGCGCTGGAGGTCTAGTTAGTGCACTTCTCGGAGTGAAGGAAT TCGAAGCCAGATGGATAGGCTGGGCTGGTGTTAATGTGCCAGATGAAGTAGGCCAGAAGGCGCTTACGAAAGCTTTGGCTGAGAAGAGATGCATACCTGT GTTCCTTGATGAAGAAATTGTTCATCAATATTATAATGGCTACTGCAACAATATACTTTGGCCTCTTTTTCACTATCTTGGTCTTCCGCAAGAAGATCGC CTTGCCACAACCAGAAGCTTTCAGTCTCAGTTTGCTGCATATAAGAAAGCCAATCAAATGTTTGCTGATGTAGTAAACAAGCACTATGAAGAGGGGGATG TTGTCTGGTGCCATGATTATCATCTTATGTTTCTGCCGAAATGCCTCAAGGACTACAACAGGAACATGAAAGTTGGTTGGTTTCTCCACACACCTTTTCC TTCATCTGAAATCCACAGGACACTGCCTTCTAGATCAGAGCTACTCCGGTCAGTTCTTGCTGCAGATTTAGTAGGATTTCATACATATGACTATGCAAGA CACTTTGTTAGTGCTTGCACTCGTATTCTTGGACTTGAGGGCACACCTGAGGGAGTTGAGGACCAAGGCAAGCTAACCCGAGTAGCAGCTTTTCCTATTG GGATAGATTCAGAGAGGTTTATCTCAGCGCTAAACCTCCCCCAGGTACAGGAGCACATAAAAGAACTGACTGAAAGATTCCGTGGCCGTAAGGTGATGTT AGGTGTTGATCGTCTGGATATGATTAAGGGAATACCACAAAAGATACTTGCATTTGAAAAGTTCCTCGAGGAGAACCCTCTATGGCGTGATAAAGTTGTT CTGCTGCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAATATCAGAAGCTTACCAGTCAGGTTCATGAAATTGTTGGACGCATAAATGGCCGATTTG GGACATTAACTGCTGTTCCAATTCACCACCTGGACCGGTCTCTGGATTTCCATGGCCTGTGCGCTCTCTATGCTGTTACTGATGTAGCACTTGTTACCTC ATTGCGTGATGGAATGAATCTTGTTAGTTATGAGTTCGTAGCATGCCAAGCTTCAAAGAAAGGTGTTCTTATTCTCAGTGAGTTTGCAGGTGCTGCTCAG TCTCTCGGTGCCGGAGCAATCCTAGTGAACCCTTGGAACATTACTGAAGTTGCTGATTCAATTCGACAAGCTTTGACTATGTCATCTGAGGAACGAGAGA AGCGGCATCATCACAATTTCGCGCATGTGACAACTCACACAGCTCAAGAATGGGCTGAAATGTTTGTTAGTGAGCTCAATGATACGGTGGTTGAGGCTCA ACTAAGGACAAGACAAGTTCCGCCTTTGCTTCCACAAGAAGCTGCAATCAACTGTTTTCTGAAATCCCATAATCGGTTGCTCATACTGGGATTCAATGCT ACGTTGACAGAGCCAGTAGACACTCCAGGAAGAAGAGGCGATCAAATAAAAGAAATGGAACTTAAATTGCACCCGGAGCTCAAGGAATCATTGCTAAAAC TTTGCCGTGATACAAAGACCACCATTGTTGTCCTCAGTGGTAGTGACAGAGGTTTGTTAGATGAGAACTTCGGGGACTATGACATGTGGCTGGCGGCAGA ACATGGCATGTTTCTACGTCTTACGAAGGGAGAATGGATGACAACCATGCCGGAACACTTAAACATGGAGTGGGTCGACAGTGTAAAGCATGTGTTTGAG TACTTCACAGAGCGGACACCAAGGTCACATTTTGAGCTCCGTGAAACATCACTTGTGTGGAACTACAAGTATGCAGGTAGCTGTCCTCCACCGTACTCGT ACCGGTATTTTAGTGCAAATTTATTTGTATTCCCCTCCCTAAATGGTGGTTCCAATGTTATGGTAGACGTGGAATTCGGAAGACTTCAAGCGAGGGACAT GCTGCAGCACCTCTGGACTGGCCCGATTTCAAATGCATCAGTAGATGTGGTCCAAGGTAGCCGGTCAGTTGAGGTTCGAGCAGTTGGCGTAACAAAGGGT GCAGCAATCGATCGTATATTGGGAGAAATTGTTCATAGCAAGCAAATGACAACACCAATTGACTATGTCTTGTGTGTCGGCCATTTTCTGGGAAAGGATG AAGACGTATACTCATTCTTCGAGCCGGAGCTCCCTTCCGACGGACTAGGTGTGATGAGAAGCAAGCAAAGCGAGAGTTCGAAGCCAGCAGGGGAAAGACG GCCTTCTTCACGGAAGCTCCCGGGGAGCAGCAGCAGAGGGGGAGGAGGAGCAAAGGCATCATCTCAAAGTAAGCCTATTCAGCGCGCTGTTCTGCACCCG GATAGACTGAGCAGTACTAGTTTCAGCAACAGCAACGGGCGTAGGGCATCTCCGGAGAAGATATCGTGGAATGTGCTTGATCTCAAGGGGGACAACTATT TCTCTTGTGCAGTCGGGAGGACACGAACGAACGCTCGCTACATGCTCGGATCATCGGATGACGTAGTCTCGTTTCTGAAGAAGCTGGCCAATGCATCATC GTTTTCCTTGGGGTAA
AA sequence Show only first row Show all	>Lus10013694 pacid=23169085 polypeptide=Lus10013694 locus=Lus10013694.g ID=Lus10013694.BGIv1.0 annot-version=v1.0 MPANQYHGNSTPYPGRVERLLRERELRELRRSNRAEVNGNHNRGESSELELRFRESDLQKNSYIEQYLEEAAAATRALNKEGGCEGHDGRPLRQRLLVVA NRLPVSAVRRGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDR LATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDYNRNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYAR HFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFISALNLPQVQEHIKELTERFRGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPLWRDKVV LLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHGLCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQ SLGAGAILVNPWNITEVADSIRQALTMSSEEREKRHHHNFAHVTTHTAQEWAEMFVSELNDTVVEAQLRTRQVPPLLPQEAAINCFLKSHNRLLILGFNA TLTEPVDTPGRRGDQIKEMELKLHPELKESLLKLCRDTKTTIVVLSGSDRGLLDENFGDYDMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWVDSVKHVFE YFTERTPRSHFELRETSLVWNYKYAGSCPPPYSYRYFSANLFVFPSLNGGSNVMVDVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKG AAIDRILGEIVHSKQMTTPIDYVLCVGHFLGKDEDVYSFFEPELPSDGLGVMRSKQSESSKPAGERRPSSRKLPGSSSRGGGGAKASSQSKPIQRAVLHP DRLSSTSFSNSNGRRASPEKISWNVLDLKGDNYFSCAVGRTRTNARYMLGSSDDVVSFLKKLANASSFSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	0	1
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	1.0	0.9554
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	1.7	0.9105
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	3.5	0.9085
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	3.5	0.9016
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	3.7	0.9116
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	4.0	0.8960
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	8.5	0.8881
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	10.2	0.8818
AT5G50290			unknown protein		Lus10001236 [exp]	10.5	0.8883
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10037217 [exp]	11.2	0.8967

Compare expression of checked genes

Lus10013694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.