Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78570 1003 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 942 / 0 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 940 / 0 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G63000 510 / 1e-179 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT5G59290 74 / 7e-14 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 73 / 8e-14 UXS5 UDP-XYL synthase 5 (.1.2) AT3G53520 67 / 2e-11 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G62830 66 / 3e-11 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G20460 66 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47650 66 / 3e-11 UXS4 UDP-xylose synthase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005560 [exp] 1136 / 0 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 1119 / 0 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 1106 / 0 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 902 / 0 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 761 / 0 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 739 / 0 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10006719 [exp] 509 / 3e-179 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10014147 [exp] 506 / 9e-178 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10031389 [exp] 82 / 1e-18 AT1G78570 84 / 2e-20 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103700 [exp] 1008 / 0 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 1003 / 0 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 884 / 0 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.003G120000 [exp] 506 / 5e-178 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G112000 [exp] 501 / 8e-176 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.010G207200 [exp] 76 / 9e-15 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 76 / 1e-14 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.002G204400 [exp] 67 / 2e-11 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 67 / 2e-11 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G179100 [exp] 64 / 1e-10 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10013695 pacid=23169131 polypeptide=Lus10013695 locus=Lus10013695.g ID=Lus10013695.BGIv1.0 annot-version=v1.0 ATGATCAGATCGCAATCATATCTCATGGGCAAGCTCGCACATTCATACTACGAAATGGACACCCACCAATTGCAAGCAGCTACACCTCACACTATAAATG CCGGCATCATCACTCTTTCCTTTCTCTACCAGATCCTTTCTCGTTTCTTCTTCCTTCTGAATCTGCTGCTGCTGCTGTTAGCTTTCTCATTTCTGGATTC AATCTGGAAATCCCTCTTGACCTGCACACAATTCATTAGGAGGTTTATCCATGTGAGCACTGATGAAGTCTACGGTGAGACTGATGAGGATGCTGTTGTG GGAAACCATGAGGCTTCACAGCTTCTTCCTACAAATCCGTATTCGGCAACAAAGGCTGGTGCTGAGATGCTTGTTATGGCCTATGGTAGGTCCTATGGGT TACCTGTGATTACAACTCGCGGGAACAATGTTTATGGCCTTAATCAATTTCCAGAGAAGTTAATTCCCAAGTTTATCCTCTTGGCAATGAGAGGGATGCC TCTGCCGATCCATGGGGATGGAACCAATGTGAGGAGTTATTTGTACTGTGAGGATGTGGCTGAGGCTTTCGAGGTGATCCTCCATAAGGGAGAAGTTGGC CATGTATACAATATTGGAACAAAGAAGGAAAGGAGGGTCAATGATGTTGCCACAGATATATGCAAGCTTTTCTCTATGAATCCCGAGTCTAGCATCAAGT TTGTTGAGAACAGACCCTTTAACGATCAAAGGTACTTCCTAGATGATGAGAAGCTGAAAAAATTGGGCTGGTCCGAGCGAACTATTTGGGAGGATGGCTT GAAGAAGACTATTGAATGGTATACTCAGAATCCCGATTGGTGGGGTGATGTCTCAGGTGCCTTGCTTCCTCACCCAAGAATGCTAATGATGCCTGGTGGG AGACACTTTGATGGTTCTGAAGATGGCAAGTCTGGGTCAGATGCCTCAAACTCTAGCCAAATAGTGGTTCCAGTTTCTAAAACGGGAACCACTGCCGCTT CCAACAAACCGGCGCTGAAGTTTTTGATCTATGGTAGGACAGGATGGATTGGTGGTCTACTTGGCAAGTTATGTGAGAAGCAAGGGATTCAATTTGAGTA TGGAAAGGGCCGCTTAGAAGATCGTTCATCACTTTTGGCCGATATTCTTAATGTTAAGCCTACTCATGTTTTTAATGCTGCTGGTGTTACTGGTAGACCA AATGTTGATTGGTGTGAATCACACAAAACAGAAACCATCCGAGCTAATGTGGCCGGGACACTTACGTTAGCAGATGTTTGCAGAGAGCAGAACCTCCTCA TGATGAATTATGCAACAGGATGTATTTTTGAATATGATGCTTCTCACAAGGAAGGTTCTGGCATAGGGTTTAAGGAGGAAGATAAACCAAACTTCACTGG TTCTTTCTACTCGAAGACTAAGGCCATGGTTGAGGAGCTGCTGAAAGAGTATGACAATGTGTGCACTCTCAGGGTTAGAATGCCGATATCGTCAGATTTG AACAACCCACGCAACTTCATAACAAAGATCTCTCGTTACAGCAAAGTCGTCAATATCCCCAACAGCATGACTGTTTTGGATGAGCTTCTACCCATTTCAA TCGAGATGGCGAAAAGGAACTTGAAGGGCATCTGGAACTTCACAAACCCTGGTGTTGTGAGCCACAACGAGATTCTGGAGATGTACAAGAAATACATCGA CCCTAAGTTTACATGGTCAAACTTCACCCTAGAGGAGCAAGCAAAGGTCATTGTGGCCCCCAGAAGCAACAACGAGATGGATGCCTCGAAGTTGAAGAAG GAGTTCCCGGAGTTGCTGTCGATCAAGGAGTCGTTGATACAGTTCGTATTTGAGGCCAACAAGAGAACATAG
AA sequence Show only first row Show all	>Lus10013695 pacid=23169131 polypeptide=Lus10013695 locus=Lus10013695.g ID=Lus10013695.BGIv1.0 annot-version=v1.0 MIRSQSYLMGKLAHSYYEMDTHQLQAATPHTINAGIITLSFLYQILSRFFFLLNLLLLLLAFSFLDSIWKSLLTCTQFIRRFIHVSTDEVYGETDEDAVV GNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGLNQFPEKLIPKFILLAMRGMPLPIHGDGTNVRSYLYCEDVAEAFEVILHKGEVG HVYNIGTKKERRVNDVATDICKLFSMNPESSIKFVENRPFNDQRYFLDDEKLKKLGWSERTIWEDGLKKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGG RHFDGSEDGKSGSDASNSSQIVVPVSKTGTTAASNKPALKFLIYGRTGWIGGLLGKLCEKQGIQFEYGKGRLEDRSSLLADILNVKPTHVFNAAGVTGRP NVDWCESHKTETIRANVAGTLTLADVCREQNLLMMNYATGCIFEYDASHKEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDL NNPRNFITKISRYSKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKKYIDPKFTWSNFTLEEQAKVIVAPRSNNEMDASKLKK EFPELLSIKESLIQFVFEANKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	0	1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	1.0	0.9809
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	3.2	0.9175
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	5.5	0.8548
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	5.5	0.8857
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	7.0	0.8925
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	7.2	0.9046
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	7.5	0.9146
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	7.5	0.8655
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	7.9	0.8886
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	8.8	0.8588

Compare expression of checked genes

Lus10013695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.