Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09830 691 / 0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005561 [exp] 936 / 0 AT1G09830 734 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225500 [exp] 718 / 0 AT1G09830 771 / 0.0 Glycinamide ribonucleotide (GAR) synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [flax] [poplar] PreATP-grasp PF02844 [flax] [poplar] GARS_N Phosphoribosylglycinamide synthetase, N domain CL0179 [flax] [poplar] ATP-grasp PF01071 [flax] [poplar] GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CL0105 [flax] [poplar] Hybrid PF02843 [flax] [poplar] GARS_C Phosphoribosylglycinamide synthetase, C domain
Representative CDS sequence Show only first row Show all	>Lus10013696 pacid=23169101 polypeptide=Lus10013696 locus=Lus10013696.g ID=Lus10013696.BGIv1.0 annot-version=v1.0 ATGGTGTGCCTCACTTCCTTCAATGTCTCTGCACCTTCCGGTAGACTGCTCCCCGTCGTCATCAACAAACTTAATTTCTCAGCTCCCTTTTATTTACCCA GAAATATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCGGTGTCCTTCCCAAGACTTTTCAGCAGTTGGCAGCATTGCGTGAATGACACTCAGCA CTCGAGACTGCTTAGTACCTGCTGGCGTGCTTGTGTTCCCCAGCAGCAATCAGGATCATTTCCTGACTCACCAGATAAGAGAGTGGCTGTATTGGTGATC GGAGGAGGAGGAAGGGAACACGCTCTTTGCTATGCCCTAAAGAGATCTCCCTCTTGTGAAACTGTCTACTGTGCCCCTGGTAATGTCGGGATTTCGAAAT CCAACGACGCCACATGTGTCCCTGACCTTAATACTGCTGATAGTTCAGCTGTAATCTCCTTCTGCCGCAAACACGGTGTAGGACTCGTTGTCGTCGGGCC AGAGTTACCACTAGTTTCGGGCCTTGCAAATGACCTAGTCAAGTCCGGTATTCCTGTTTTCGGTCCATCAGCAGAGGCTGCTGCTTTGGAAGGCTCCAAG AATTTCATGAAGATCATATGTGACAAATATGGAATTCCCACTGCCAAGTACCAAACATTTAGTGATTCAGGTGCAGCGAAGAGATACATTCAAGAGCAAG GGGCTCCTATAGTGATCAAAGCAGACGGATTGGCTGCCGGAAAAGGAGTGATCGTGGCAACGACGCTGGAGGAGGCTTTTGAAGCTGTTGATTCCATGCT AGTTGATGCCGTTTTTGGTTCGGCTGGTTGTCAAGTCATTGTTGAGGAATTCTTAGAGGGAGAGGAAGCATCTTTCTTTGCCCTAGTGGACGGAGACAAT GCGATTCCATTAGAATCCGCACAAGATCATAAACGAGTTGGCGATGGCGATACAGGACCGAATACAGGTGGCATGGGTGCTTACTCTCCTGCTCCAGTTT TAACTAAGGAGTTGGAGTCGGTAGTTATGGAGAGTATTATACTACCTACAGTTAAAGGAATGGCAGCAGAGGGCTGTAAGTTTGTTGGGGTTTTATATGC CGGGTTAATGATCGAGAAGAAGTCCGGCTTGCCCAAACTTATCGAGTACAATGTCCGGTTTGGAGATCCAGAGTGTCAGGCATTAATGGTTCGTCTAGAA TCGGACCTAGTGAAAGTGTTGCTTGCAGCTTGTGAAGGGAAACTAAGCGAAGTATCGTCACTGAACTGGTCTCCAGGGTCAGCCATGGTTGTGGTGATGG CAAGCAATGGCTATCCTGGTTCCTATGAGAAGGGAAGTGTTATTCAAAACCTGGAAGAAGCTGAAAATGATGTAGCTGGAACAGTCAAGATATTTCATGC CGGAACTGCTCTGGACTGTGATGGTAACTTTGTATCAGCGGGAGGTCGTGTTCTTGGGGTCACTGCAAAAGGAAGTGATCTTGCTGAAGCAAGGGATAGA GCTTATCAAGCTGTGGAGGCAATCAACTGGCCTGGCGGATTCTACAGACGAGACATTGGATGGCGAGCTCTTCCTCAGCAGAAGAACAGTTAA
AA sequence Show only first row Show all	>Lus10013696 pacid=23169101 polypeptide=Lus10013696 locus=Lus10013696.g ID=Lus10013696.BGIv1.0 annot-version=v1.0 MVCLTSFNVSAPSGRLLPVVINKLNFSAPFYLPRNISSSSSSSSSSASVSFPRLFSSWQHCVNDTQHSRLLSTCWRACVPQQQSGSFPDSPDKRVAVLVI GGGGREHALCYALKRSPSCETVYCAPGNVGISKSNDATCVPDLNTADSSAVISFCRKHGVGLVVVGPELPLVSGLANDLVKSGIPVFGPSAEAAALEGSK NFMKIICDKYGIPTAKYQTFSDSGAAKRYIQEQGAPIVIKADGLAAGKGVIVATTLEEAFEAVDSMLVDAVFGSAGCQVIVEEFLEGEEASFFALVDGDN AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELESVVMESIILPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQALMVRLE SDLVKVLLAACEGKLSEVSSLNWSPGSAMVVVMASNGYPGSYEKGSVIQNLEEAENDVAGTVKIFHAGTALDCDGNFVSAGGRVLGVTAKGSDLAEARDR AYQAVEAINWPGGFYRRDIGWRALPQQKNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	0	1
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	1.0	0.9003
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	2.6	0.8613
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	6.9	0.8719
AT1G09590			Translation protein SH3-like f...		Lus10016241 [exp]	7.7	0.8707
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	7.9	0.8282
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	8.9	0.8709
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	9.4	0.8550
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	9.7	0.8873
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	12.5	0.8664
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015809 [exp]	14.0	0.8038

Compare expression of checked genes

Lus10013696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.