Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17590 360 / 2e-127 CHE1, BSH BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005562 [exp] 318 / 9e-112 AT3G17590 251 / 3e-85 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004100 [exp] 348 / 1e-122 AT3G17590 385 / 2e-137 BUSHY GROWTH, transcription regulatory protein SNF5, putative (BSH) (.1), transcription regulatory protein SNF5, putative (BSH) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04855 [flax] [poplar] SNF5 SNF5 / SMARCB1 / INI1
Representative CDS sequence Show only first row Show all	>Lus10013697 pacid=23169065 polypeptide=Lus10013697 locus=Lus10013697.g ID=Lus10013697.BGIv1.0 annot-version=v1.0 ATGAAACCACTGCCATTGACGACCGCCAAAACGCCTGTGAAATTCAGAATGCCAACGTCTGAGAACCTAGTACCAATTCGCTTGGATATCGAAGTTGATG GACAGCGCTTCAAAGACACCTTCACCTGGAACCCCTCTGATACTGATTCAGAAGTGGTTGTTTTTGCTAAAAGAACTGTTAAAGACTTGAAGCTTCCTCC TTCTTTCGTTACGCAGATTGCACACTCTATTCAGTCACAGTTGGGTGATTTCAGATCATATCAAGGGCAAGATATGTTCACTGGGGAAAAGATTGTCCCA ATCAAGCTGGATCTTCGTGTTAATCACACTCTTATCAAGGATCAATTTTTGTGGGACATGAACAACTTTGATAGTGACCCTGAAGAATTTTCTAAAACCT TGTGCACTGATTTGGGTATTGAAGACCCTGAAGTTGGGCCCGCAGTCGCCTTTGCTATCAGAGAACAACTTTATGAGGTTGCTATTCAAAGTGTAGCAAC AGCAAGGGAAAGTCGAATTTCCAAAAAGGGCCGTCGCAGTGGTGAATATTCTTCCAGTTCCAGGACAACTGGCCCTGCACTGGACTTCACTAAGCTATTC AGCAACAGATACAGCGTAATCCGGAAAAGGAAGGAGTGGGACCTGTACGAGCCAATGGTAGATATCTTATCGAGCGAGGAAGTGACTGCGCTTGAAGCAA GGGAAGAGAGGAAAACTCGATGA
AA sequence Show only first row Show all	>Lus10013697 pacid=23169065 polypeptide=Lus10013697 locus=Lus10013697.g ID=Lus10013697.BGIv1.0 annot-version=v1.0 MKPLPLTTAKTPVKFRMPTSENLVPIRLDIEVDGQRFKDTFTWNPSDTDSEVVVFAKRTVKDLKLPPSFVTQIAHSIQSQLGDFRSYQGQDMFTGEKIVP IKLDLRVNHTLIKDQFLWDMNNFDSDPEEFSKTLCTDLGIEDPEVGPAVAFAIREQLYEVAIQSVATARESRISKKGRRSGEYSSSSRTTGPALDFTKLF SNRYSVIRKRKEWDLYEPMVDILSSEEVTALEAREERKTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10013697 [exp]	0	1
AT3G50780			unknown protein		Lus10016789 [exp]	3.2	0.7972
AT5G53500			Transducin/WD40 repeat-like su...		Lus10017902 [exp]	4.4	0.7600
AT4G35980			unknown protein		Lus10009388 [exp]	5.7	0.8314
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	8.8	0.8380
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	11.0	0.8142
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	11.5	0.8134
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024849 [exp]	15.9	0.7590
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	16.2	0.7958
AT1G05430			unknown protein		Lus10006108 [exp]	16.4	0.7606
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	17.7	0.7875

Compare expression of checked genes

Lus10013697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.