Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14750 281 / 1e-93 unknown protein AT1G55170 137 / 2e-38 unknown protein AT1G67170 139 / 3e-38 unknown protein AT2G30120 111 / 2e-28 unknown protein AT5G61920 87 / 8e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005563 [exp] 589 / 0 AT3G14750 288 / 2e-96 unknown protein Lus10038143 [exp] 431 / 4e-153 AT3G14750 275 / 1e-91 unknown protein Lus10035371 [exp] 139 / 3e-39 AT1G67170 284 / 2e-95 unknown protein Lus10037647 [exp] 137 / 2e-38 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 137 / 3e-38 AT1G55170 236 / 2e-77 unknown protein Lus10030976 [exp] 140 / 4e-38 AT1G67170 294 / 1e-96 unknown protein Lus10026389 [exp] 134 / 3e-37 AT2G30120 159 / 2e-47 unknown protein Lus10015628 [exp] 132 / 7e-37 AT1G55170 211 / 3e-68 unknown protein Lus10042267 [exp] 128 / 3e-34 AT2G30120 157 / 2e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382700 [exp] 387 / 1e-135 AT3G14750 297 / 6e-100 unknown protein Potri.009G076700 [exp] 164 / 2e-48 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 154 / 9e-45 AT2G30120 161 / 4e-48 unknown protein Potri.003G037900 [exp] 153 / 2e-44 AT1G55170 259 / 2e-86 unknown protein Potri.006G178100 [exp] 147 / 3e-42 AT5G61920 155 / 3e-46 unknown protein Potri.017G109700 [exp] 147 / 2e-40 AT1G67170 282 / 3e-91 unknown protein Potri.018G100100 [exp] 43 / 5e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013698 pacid=23169129 polypeptide=Lus10013698 locus=Lus10013698.g ID=Lus10013698.BGIv1.0 annot-version=v1.0 ATGTCTGGAAGAAACCGTGGACCGCCGTTTCCAATGAGAGGCTTACCGCCTAAAGATGGACCATTACCATCCATCTCTGAACAACATTTTGGAAGGGGTC TAGTAGGATCACTCCCACCGCATCCTTCCTTGCTTGATGATATTAGGGAACCACAGTTTGGTTTCGATCCTCGGCGACTACCCCCTCCTCATCCTGCAGT GATTGAGGAGCGTTTGGTTGCTCAATTCCAAGACATTCAAGCTTTATTGGGCGACAATCAGCGGCTGGCTGCAACTCATGTTGCACTGAAGCAGGAACTA GAGGCCACACAGCAGGAACTGCAACGGATGTCCCTCTTTGCTGATTCGTTGCACCCGGATAAGGATATTCAGATGAGGGACTTGCGTGAGAAGTCTTTGA AATTGGAATCAGACCTTCGTGGGATAGAGACAATGAGGAATGAGCTTCATCGTGTTTGTGCTGATATTAAGGAACTCACTGATACGAAGCAAGAACTTAC ACGTAGGGTGCAAATGATGACGCAGGATCTGGCTCGTTATAATACGGATTTGAAACAAGTGCCGTCTTTGAAGACGGATATTGAGACTACAAAACAGGAA TTGCAGCGTGCACGAGCTGCGATTGAATATGAGAAGAAAGGATATGCGGAGAATTTTGAGCATGGTAAGGTGATGGAAAATAAATTGGTTTCAATGGCTA GAGAGTTGGAGAAGCTTCATGCGGAGATAGCAAATGCAGAAAAGCGAGCCCATCCTGTTCCTAATGTTGGACATCAAGCTTATTATGCTAACTACAACAA TCCTGAATCCGGATATGCTGGAAATCCTTATCCTGCTGGCTATGGCATGAACCCAGTGCAGCTAAACGCTGAAAGTTATTCACAGTACGGAGTTGGCCCT CCTCCATGGGGAGGTTCATATGATATGCGAGCTCAAGGACGATAG
AA sequence Show only first row Show all	>Lus10013698 pacid=23169129 polypeptide=Lus10013698 locus=Lus10013698.g ID=Lus10013698.BGIv1.0 annot-version=v1.0 MSGRNRGPPFPMRGLPPKDGPLPSISEQHFGRGLVGSLPPHPSLLDDIREPQFGFDPRRLPPPHPAVIEERLVAQFQDIQALLGDNQRLAATHVALKQEL EATQQELQRMSLFADSLHPDKDIQMRDLREKSLKLESDLRGIETMRNELHRVCADIKELTDTKQELTRRVQMMTQDLARYNTDLKQVPSLKTDIETTKQE LQRARAAIEYEKKGYAENFEHGKVMENKLVSMARELEKLHAEIANAEKRAHPVPNVGHQAYYANYNNPESGYAGNPYPAGYGMNPVQLNAESYSQYGVGP PPWGGSYDMRAQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14750			unknown protein		Lus10013698 [exp]	0	1
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10025607 [exp]	3.6	0.8010
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	23.2	0.7965
AT5G57370			unknown protein		Lus10006974 [exp]	77.5	0.7503
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	84.1	0.7192
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	90.8	0.7317
AT5G57950			26S proteasome regulatory subu...		Lus10036267 [exp]	104.2	0.7261
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10015850 [exp]	115.8	0.7271
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	131.2	0.7142
AT3G10430			F-box and associated interacti...		Lus10007848 [exp]	141.8	0.6854
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030825 [exp]	230.7	0.6868

Compare expression of checked genes

Lus10013698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.