Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10330 554 / 0 ATHPA1, HPA1, HISN6A, EMB2196 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3) AT1G71920 554 / 0 HISN6B HISTIDINE BIOSYNTHESIS 6B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005564 [exp] 691 / 0 AT1G71920 597 / 0.0 HISTIDINE BIOSYNTHESIS 6B (.1.2.3) Lus10017934 [exp] 49 / 4e-06 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 49 / 6e-06 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018962 [exp] 47 / 2e-05 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 42 / 0.0006 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113900 [exp] 595 / 0 AT5G10330 612 / 0.0 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10013699 pacid=23169076 polypeptide=Lus10013699 locus=Lus10013699.g ID=Lus10013699.BGIv1.0 annot-version=v1.0 ATGAGTGTTGTGGGTGTTTCAAAGATCCCTTCTTTCAGCCTGATCACCCTGAAAACTAATCCGGACTCGGTTTTCGTTCCTTCAAGCACCACTTCAGTTT TTCAACTGAAGAAACGCACCAGGGTTATTTCCATGGCTGCGTCCAGCATACCTGCAGAAAATGTGACTGATGACAAACAGAAAGTGACTGGCGATTCATT TATTCGATCGCACTTGAAAACAATGTCTCCCTATCAGCCCATTTTACCTTTTGAGGTTTTATCTGCTCGATTAGGTAGGAAGGCTGAGGATATAGTCAAA TTGGATGCCAATGAGAATCCTTATGGCCCTCCTCCAGAAGCAAGTGCTGTGATGGAAGCTTTGGGTTCTTTGAAATTTCCTTACATATATCCGGATCCTG AAAGTCGTAGACTTCGAGAGGCCCTTGCAAAAGATTCTGGCCTCGAATCGGACTACATTCTTGTAGGATGTGGTGCAGATGAGCTAATTGATCTTATTAT GCGCTGCACCTTGGATCCTGGTGACAAGATTGTCGATTGTCCTCCAACTTTCACAATGTATGAGTTTGATGCTTCTGTTAATGGGGCTCATGTTATTAAA GTCCCAAGGAAGCCTGACTTTAGCTTAGATGTGGAACTCATCTGTGATGCTGTTAGACGGGAGAAACCGAAATGCATATTCTTGACATCACCAAACAACC CAGATGGGAGTATAATTAAAGATGAAGAACTGTTAAAAATCCTGGAACTCCCTCTTCTGGTTGTGCTGGATGAAGCATATATCGAGTTTTCAGGTTTAGA ATCAAAGATGAATTGGGTGAAGGAGCACGAAAACCTGATTGTTCTACGAACTTTCAGCAAAAGAGCAGGTCTAGCAGGACTGAGAGTAGGGTACGGAGCA TTTCCCAGTAGTATAATTCAGTATCTCTGGAGAGCTAAGCAGCCATATAATGTTTCTGTTGCTGCTGAAGTTTCTGCATGTGCAGCACTGGAGAATCCCA CTTACCTGGAGAGAGTAAAAGATGCCTTGGTACAAGAGCGGGAGAGGCTCTATAAATTTCTGGAGGCAGTGCCCTTTCTGAAACCATTCCCCAGCTATTC CAATTTCATTCTTTGTGAAGTTAAACCCGGTATGGACGCCAAGAAGCTCAAGGAGGATCTAGCGAACATGGGTGTGATGGTTCGACACTACAGCAAGAAA GAACTTAATGGGTATATCCGGATCTCGGTTGGTAAACCGGAGCAAACCGATGTACTGATGCAGTGCCTAAACTCCATTTCATGA
AA sequence Show only first row Show all	>Lus10013699 pacid=23169076 polypeptide=Lus10013699 locus=Lus10013699.g ID=Lus10013699.BGIv1.0 annot-version=v1.0 MSVVGVSKIPSFSLITLKTNPDSVFVPSSTTSVFQLKKRTRVISMAASSIPAENVTDDKQKVTGDSFIRSHLKTMSPYQPILPFEVLSARLGRKAEDIVK LDANENPYGPPPEASAVMEALGSLKFPYIYPDPESRRLREALAKDSGLESDYILVGCGADELIDLIMRCTLDPGDKIVDCPPTFTMYEFDASVNGAHVIK VPRKPDFSLDVELICDAVRREKPKCIFLTSPNNPDGSIIKDEELLKILELPLLVVLDEAYIEFSGLESKMNWVKEHENLIVLRTFSKRAGLAGLRVGYGA FPSSIIQYLWRAKQPYNVSVAAEVSACAALENPTYLERVKDALVQERERLYKFLEAVPFLKPFPSYSNFILCEVKPGMDAKKLKEDLANMGVMVRHYSKK ELNGYIRISVGKPEQTDVLMQCLNSIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	0	1
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	7.3	0.8328
AT5G01590			unknown protein		Lus10012500 [exp]	9.1	0.8724
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	11.7	0.8474
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	12.6	0.8643
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	13.4	0.8193
AT4G31890			ARM repeat superfamily protein...		Lus10041017 [exp]	15.3	0.8545
AT2G44640			unknown protein		Lus10043347 [exp]	15.6	0.8636
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	16.1	0.8478
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	18.2	0.8627
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	18.3	0.8372

Compare expression of checked genes

Lus10013699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.