Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78560 512 / 6e-176 Sodium Bile acid symporter family (.1) AT1G68470 391 / 3e-128 Exostosin family protein (.1) AT2G29040 274 / 8e-81 Exostosin family protein (.1) AT4G13990 267 / 5e-80 Exostosin family protein (.1) AT5G62220 264 / 5e-79 ATGT18 glycosyltransferase 18 (.1) AT2G20370 266 / 1e-78 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32750 259 / 2e-77 Exostosin family protein (.1) AT2G31990 252 / 4e-75 Exostosin family protein (.1) AT2G32740 250 / 1e-74 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G41250 242 / 2e-70 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005565 [exp] 671 / 0 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10005566 [exp] 639 / 0 AT1G68470 457 / 1e-158 Exostosin family protein (.1) Lus10013701 [exp] 396 / 6e-130 AT1G68470 466 / 4e-162 Exostosin family protein (.1) Lus10010677 [exp] 286 / 3e-87 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 283 / 3e-86 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10005567 [exp] 265 / 1e-81 AT1G68470 291 / 2e-95 Exostosin family protein (.1) Lus10022862 [exp] 269 / 9e-80 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10001578 [exp] 268 / 9e-80 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 266 / 1e-79 AT4G13990 499 / 1e-173 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103200 [exp] 520 / 3e-179 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1) Potri.001G382200 [exp] 420 / 6e-139 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 414 / 1e-136 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 263 / 6e-78 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.012G130700 [exp] 256 / 3e-76 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 251 / 3e-74 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G321000 [exp] 249 / 3e-73 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 245 / 1e-70 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 239 / 2e-69 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.018G074400 [exp] 233 / 1e-68 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family CL0064 [flax] [poplar] PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10013700 pacid=23169112 polypeptide=Lus10013700 locus=Lus10013700.g ID=Lus10013700.BGIv1.0 annot-version=v1.0 ATGCAGTCTTCACTTGCCTCTCCACTCTCCAACAACAATATCAGCTTCAATCCATTGCTGAAAACAACAACAACCTCATGCCGCCACTTCATACACTCCT CCTCAACCGCTCTACCCAGCTCGCTTAAATCCGATTTCCCATCGAAGGCACTCCACCGACCGAGTCAGCTCAACCTACAGTGGTCACACTCACCGCCGCA TTCTTCTCTCCCTTCGAGGTCGACCGTCGCCCGCTGCGGCATTTCGTCCAACAATTCGAGTGCAAACGAGGTCAAAAGTATCAGAGCATGGGTTGAGGCT GTTACAGAGGCGATTTCCACGGCATTTCCAATATGGGTGTCGTTTGGTTGCTTGCTGGGACTCCTGAAACCCGCTTCTTACACTTGGGTTACCCCGAAAT GGACCATCTTTGGACTCACTCTCACTATGCTTGGTATGGGTATGACGCTCACCCTAGATGATCTGAGCAATGCTTTCGCCATGCCCAAACAGTTGTTTGC TGGGTTCCTACTCCAGTACTCGGTGATGCCAATGTCAGCATTTCTGGTGAGCAAGATGTTAAATCTGCCATCCCATTATGCTGCTGGTCTAATATTGGTT GGTTGCTGTCCTGGTGGGACTGCCAGTAATATCGTGACCTACATTGCGCGCGGGAATGTGGCTCTCTCAGTTTTGATGACGGCAGTGAGCACTCTGACAG CTGTGGTCATGACACCATTTTTAACAGCTAAACTAGCTGGCCAGTATGTTGCAGTAGATGCAGCAGGATTGTTAACATCAACCATGCAGGTTGTTCTTCT TCCCGTGCTGGCTGGTGCCTTTCTAAATCAGTATTTCCAGAGCTTGGTCAAGTTTGTCTCTCCCTTGATGCCACCTATTGCTGTGGGAACTGTTGCAGTC CTTTGTGGAAATGCAATTGCCCAAAGCTCTTCTGCTATTCTGATGTCTGGCAAACAAGTTGTGCTAGCAGCATGTCTTCTTCACGCTTCAGGGTTTTTCT TTGGATATGTACTTTCAAGGATTCTTGGAGTTGACACAGCTTCTTCCCGGACCATTTCTATCGAAGTTGGCATGCAGAACTCGGTGCTTGGGGTGGTTCT TGCAACTCAGCACTTTGGGAATCCACTCACTGCTGTACCATGTGCAGTCTCTAGTGTGTGCCATTCGATCTTAGGCAGTGTCCTTGCCGGAATCTGGAGA CGCAGTGTGCCTCCAGAGAAGCAGGAGTCTAATGTTGTTAATCTAGTTGGGTTGAACCGGATGATCTCGGCGCGTCTTCAAATGGGTTGTCGATTCGGGT TGGATTGGGTTTATCGAGTTTTTAAACGCGGTATTGGAAAATTACTAACTGCCTTTTTCAAAAATTTGATTCGTCTCATTGCGACTGAATGGTTCTCTAG TCGGTTTGTGTCTGGCGGACGTCTTTTTCAGTTCACTGGAGAGGAGATTTTCCACTCTCGGATGGAAAACCACCCGTGCCGTACGAAGGACCCCGTGCGT GCAAGCCTCTTCTATGTACCGTTCTATGGCGGGTTCCATATGTCAAGTAACATGCATGACGCCAACCACACTGCGCGTGATGAGCAAGCAATGCGGCTGG CCGAACATGTCAAGCTACAACCTTGGTGGCATAGAAGAAATGGGAAGGACCATTTTATGGTCCTAGGCCGGACTGCATGGGATTTCATGCGTCCAGACCA CGATCATCCTGACCATTGGTATGACTACGGGCCTAACAGCATGTTCAGTCACCCAACGGTTAAAAACATGTCTGTGTTCGTCCTGGAGAGGCACCCGTGG GAAGGGCACAACCAACACGGAATCCCATACCCGTCCTACTTCCACCCTTACACATCCGACCAGGTCGCCCACTGGCAGCGAATCGTGCGAGAATCCAAAC GACCATACCTATTCTCCTTCGTGGGAGCAAAACGAAAGGAAGGTGAATCAGCCGCAATTCGAGACGAGCTAATGAGGCAATGCTCGGATTCGAAACAATG CAAGCTGCTCAACTGCACGACGGACGGGTCCAAGTGCAACGATCCAACACGAGTGCTGAGAGCGATGAAGGAGTCGCAGTTCTGTCTACAGGCACGTGGC GACTCCTTCACTCGACGGTCATTGTTCGACTCCATCCTGGCCGGGTGCATACCTGTGGTGTTCTCCCAACACACCGCGTACACACAGTACTCGATGTACC TGCCCGATGATACGAGGTCGTATTCGGTGTTTATTGAAGAGAAGGAGGTGGTGGGAAGGAAGATGAATGTAGAGAAGGAACTTGAGAAGATTGGGAGTTG GGAAGTTGGGGAGATGAGGAAAGTTGTGGTGGATTTGATTCCTAGACTTACATTTGCTCATCCAGATGCCGGTGGTGATAAAGGGTTTGAAGATGCCGTC GATATTGCGATATCATCGTTGCTGCGGGAAGTAAAATAG
AA sequence Show only first row Show all	>Lus10013700 pacid=23169112 polypeptide=Lus10013700 locus=Lus10013700.g ID=Lus10013700.BGIv1.0 annot-version=v1.0 MQSSLASPLSNNNISFNPLLKTTTTSCRHFIHSSSTALPSSLKSDFPSKALHRPSQLNLQWSHSPPHSSLPSRSTVARCGISSNNSSANEVKSIRAWVEA VTEAISTAFPIWVSFGCLLGLLKPASYTWVTPKWTIFGLTLTMLGMGMTLTLDDLSNAFAMPKQLFAGFLLQYSVMPMSAFLVSKMLNLPSHYAAGLILV GCCPGGTASNIVTYIARGNVALSVLMTAVSTLTAVVMTPFLTAKLAGQYVAVDAAGLLTSTMQVVLLPVLAGAFLNQYFQSLVKFVSPLMPPIAVGTVAV LCGNAIAQSSSAILMSGKQVVLAACLLHASGFFFGYVLSRILGVDTASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWR RSVPPEKQESNVVNLVGLNRMISARLQMGCRFGLDWVYRVFKRGIGKLLTAFFKNLIRLIATEWFSSRFVSGGRLFQFTGEEIFHSRMENHPCRTKDPVR ASLFYVPFYGGFHMSSNMHDANHTARDEQAMRLAEHVKLQPWWHRRNGKDHFMVLGRTAWDFMRPDHDHPDHWYDYGPNSMFSHPTVKNMSVFVLERHPW EGHNQHGIPYPSYFHPYTSDQVAHWQRIVRESKRPYLFSFVGAKRKEGESAAIRDELMRQCSDSKQCKLLNCTTDGSKCNDPTRVLRAMKESQFCLQARG DSFTRRSLFDSILAGCIPVVFSQHTAYTQYSMYLPDDTRSYSVFIEEKEVVGRKMNVEKELEKIGSWEVGEMRKVVVDLIPRLTFAHPDAGGDKGFEDAV DIAISSLLREVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78560			Sodium Bile acid symporter fam...		Lus10013700 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	1.4	0.9383
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	2.8	0.9318
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	3.9	0.9236
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	4.2	0.9102
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	4.7	0.8844
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	5.7	0.9199
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	6.0	0.9018
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	9.8	0.9042
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	10.6	0.8909
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	11.4	0.9187

Compare expression of checked genes

Lus10013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.