Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68470 466 / 2e-162 Exostosin family protein (.1) AT2G29040 313 / 2e-99 Exostosin family protein (.1) AT4G13990 297 / 2e-95 Exostosin family protein (.1) AT2G20370 299 / 4e-95 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32750 290 / 7e-93 Exostosin family protein (.1) AT1G63450 286 / 1e-89 RHS8 root hair specific 8 (.1) AT5G62220 282 / 2e-89 ATGT18 glycosyltransferase 18 (.1) AT2G31990 278 / 1e-88 Exostosin family protein (.1) AT2G32740 271 / 4e-86 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G41250 273 / 8e-86 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005566 [exp] 469 / 5e-163 AT1G68470 457 / 1e-158 Exostosin family protein (.1) Lus10005567 [exp] 463 / 1e-162 AT1G68470 291 / 2e-95 Exostosin family protein (.1) Lus10013700 [exp] 399 / 2e-131 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10001028 [exp] 316 / 8e-103 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 309 / 4e-100 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10010677 [exp] 306 / 7e-99 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10022862 [exp] 306 / 1e-97 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 303 / 1e-97 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 303 / 1e-96 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382200 [exp] 491 / 9e-172 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 484 / 8e-169 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 300 / 2e-95 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 288 / 1e-91 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 288 / 1e-91 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 286 / 2e-89 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 279 / 1e-87 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 256 / 7e-80 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 248 / 2e-76 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 239 / 1e-73 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10013701 pacid=23169073 polypeptide=Lus10013701 locus=Lus10013701.g ID=Lus10013701.BGIv1.0 annot-version=v1.0 ATGGCGAAATCACTAGTAGATCGGAGATTCAAACCCCATCTATACATCTCCTATCTCTTCCCTCTCCTCTTCCTCTCCCTCTGCCTCCTCTTCTTTTCCC TTCACCGCTTCCATTGCCCCACCGCCGACAACGGCGGCAACAACCAGAAACCCGCCGCCTGCCGCCGTGGCCTCCCTTTGGTGTACATTTACGACCTCCC CTCCGAATTCAACTCCGGCCTCCTCCAAGATTGCGCCCACTTGAACTCCTACACGGACATGTGTCCTTACGTGGCAAACCGCGGACTCGGCCAGCCACTC GGCGAGTCCACGTGGTACGCCACTCACCAGTTCATCGGCGAGATGATCTTCCACGCCAGGATGGAAAACTATCCTTGTCGTACATTGGACCCCACTGAAG CTGACCTGTTCTACATTCCGTTTTACGGCGGGCTCCACCAGTCCAGCAAGGCGAGGGAAAAGAATCTCACTGTACGTGACCAGCTGACAGTCAACCTGGC TCAACACCTCGTCTGGCTGACTAGGCGTCAAGGTAGGGACCACTTTCTGGTTCTGGGCCGGACCGCGTGGGATTTCATGAGGAGTGATAATGATGGTGGG CCAGATTACGGGGCTAACGGGCTGTTGAGGCTGACGGCGTTAAGAAACGTGACGGTGCTGACGGTGGAGCGGCAGCCGTGGGAAGGAGGGGAGAGGCAAG TGGGGATTCCTTACCCTTCTTACTTTCATCCGTTTAACGTTGACCAGGTGATGACGTGGCAAAAGGATGTAAAGGGGTCGAGGCGGCCGTACTTGTGGTC GTTCATCGGAGCGCCGCGGAAGGGCGGAGGGATCGCAGCCGTGAGGGATGAGCTGATGCGGCAGTGCGATGAGTCGAAGAAGTGTATGCTGGTGAATTGT ACGATGAGTGAGGAGAATGGGGACAGATTCAAGTGCCATGATCCTAAGGAAGTCGTCAAAGTTATGAGACAATCCCAATTTTGCTTGCAGGCACCGGGGG ACTCGTACACACGGCGGTCGACGTTCGACGCGGTGCTGACAGGGTGCATTCCGGTGTTCTTCTCCCGGCACACGGCGTACTCGCAGTACAAGTGGTACTT CCCGGAGGACCCGACGTCGTATTCGGTGTACATGGACGAGAAAGAGGTGATAATGGCCGGAAAGAGCGTTGAGGAAGAACTGTTGAAAATTGATGAGAAG AAAGTGGAGGAAATGAGGGAACTGATAGTAGAAGAGTTGATGCCGAGGTTGACATTTGCGCATCCGAATTCGAGTAGTGATGCTGATAAGGGGTTCGAGG ATGTAGTTGATGTTGCACTCTCTGGTTTGTTTAACAAACTAGTAGGCACTTCACTCCTGAGTGCGGCTCGAGGTCACAAATAA
AA sequence Show only first row Show all	>Lus10013701 pacid=23169073 polypeptide=Lus10013701 locus=Lus10013701.g ID=Lus10013701.BGIv1.0 annot-version=v1.0 MAKSLVDRRFKPHLYISYLFPLLFLSLCLLFFSLHRFHCPTADNGGNNQKPAACRRGLPLVYIYDLPSEFNSGLLQDCAHLNSYTDMCPYVANRGLGQPL GESTWYATHQFIGEMIFHARMENYPCRTLDPTEADLFYIPFYGGLHQSSKAREKNLTVRDQLTVNLAQHLVWLTRRQGRDHFLVLGRTAWDFMRSDNDGG PDYGANGLLRLTALRNVTVLTVERQPWEGGERQVGIPYPSYFHPFNVDQVMTWQKDVKGSRRPYLWSFIGAPRKGGGIAAVRDELMRQCDESKKCMLVNC TMSEENGDRFKCHDPKEVVKVMRQSQFCLQAPGDSYTRRSTFDAVLTGCIPVFFSRHTAYSQYKWYFPEDPTSYSVYMDEKEVIMAGKSVEEELLKIDEK KVEEMRELIVEELMPRLTFAHPNSSSDADKGFEDVVDVALSGLFNKLVGTSLLSAARGHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68470			Exostosin family protein (.1)		Lus10013701 [exp]	0	1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	7.6	0.7949
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	8.4	0.7979
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	16.3	0.7676
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	26.7	0.6965
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	28.6	0.6963
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	32.8	0.7516
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	35.5	0.7389
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	39.8	0.7309
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	49.2	0.7162
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	54.3	0.7162

Compare expression of checked genes

Lus10013701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.