Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53510 803 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G14720 793 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT2G42880 744 / 0 ATMPK20 MAP kinase 20 (.1) AT5G19010 682 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT1G73670 658 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 657 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 645 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 612 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 345 / 7e-114 ATMPK4 MAP kinase 4 (.1) AT4G11330 342 / 1e-112 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005568 [exp] 1112 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10041234 [exp] 665 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 656 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10021945 [exp] 654 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021784 [exp] 631 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 616 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 533 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10027091 [exp] 350 / 3e-115 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 350 / 4e-115 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381300 [exp] 887 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.011G102500 [exp] 884 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.005G201800 [exp] 796 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.002G059900 [exp] 793 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.008G200800 [exp] 697 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.010G029700 [exp] 696 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 669 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 664 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 640 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 634 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013702 pacid=23169075 polypeptide=Lus10013702 locus=Lus10013702.g ID=Lus10013702.BGIv1.0 annot-version=v1.0 ATGCAGCAAGACCACCCTAGGAAGGATTTGGAGTTCTTCACCGAATACGGAGATGCCAATAGATATAAGATTTTGGAGGTCATAGGTAAAGGAAGCTATG GAGTTGTTTGTGCGGCAATCGACACGCACACGGGCGAAAAAGTGGCTATAAAGAAGATACACGATGTCTTTGAGCACATCTCTGATGCGATTCGGATTTT GAGAGAAGTCAAGTTGCTTAGGTTACTACGGCACCCTGACATCGTCGAGATTAAGCGGATTATGCTACCCCCTTCAAAGAGGGAGTTCAGAGACATTTTC GTTGTTTTTGAGCTCATGGAGTCCGATCTTCATCAGGTCATCAAAGCTAATGATGACCTGACGCGCGAACATCACCAATTTTTCCTATATCAAATGCTGC GTGCATTGAAGTATATGCATACAGCGAATGTGTACCATAGAGATCTTAAGCCCAAGAACATATTGGCAAATGCCAACTGCAAGTTGAAAATATGCGACTT TGGATTAGCAAGAGTTGCATTTACCGATACGCCAACTACAGTTTTTTGGACGGATTATGTAGCCACCAGATGGTATAGAGCGCCTGAGCTTTGTGGATCT TTCTCTTCCAAGTATACTCCGGCAATTGATATTTGGAGCATTGGTTGTATCTTCGCGGAGGTGTTGACAGGGAAGCCACTGTTTCCTGGTAAAAGTGTAG TCCACCAATTGGAACTAATCACTGATCTTCTGGGGACTCCATCAATGGATACCATTTCTGGGGTGAGAAATGATAAAGCGAGGAAGTATTTAACCGAAAT GAGGAAGAAACAGCCTGTGCCATTTGCACAGAAGTTCCCAACTGCCGATCCTTTAGCGCTTCGTCTTCTTCAAAGGCTGTTAGCATTTGATCCTAAGGAT AGACCGACTGCTGAGGAGGCGCTTGCGGACCCTTACTTCAGGGGCCTCTCCAAAATTGAGAGAGAACCTTCTTGTCAGCCTATCTCAAAGTTGGAATTTG AGTTTGAAAGGAGAAGGGTGACAAAGGAGGACATAAGGGAGCTTCTTTATCGAGAAATACTGGAGTATCATCCACAGTTGTTGAAAGATTATATGAGTGG AAATGAAGGCACCAATTTCCTTTATCCTAGTGCGATAGGTCATTTTAGAAAGCAGTTTGCATACCTTGAAGAGAATAGCGGTCGGAGTGCACCAGTCATT CCTCTGGAGCGGAAACACGTCTCTCTCCCTCGGCCAACAGTTCACGCTTCAACTATGCCTCATAACATGCCAAGTTCAACATCAGTTGACAACCATCAAG TAACAGATGAAGTCTCGAAAAACTTTCGAGGAACCGAGAGTAATCCTGGAAATGCATCCAGGACTCTGCGGCCTCCGCCAAGAGGGCCAACAGGCAATGC AGCGAAGCCGGGGAGAGTCGTTGGATCATTTGTGCAATGTGACGGCAACAGAAACGTGAAAGACGGGTATTTGTACCGGAACACCATCCTTCCGTCACAG ACGACTGCCACAGCTTCGCCACCGTGTTTCTTCAGGACCAACTCCGCAACGAGAGATAGGGACAACTTGTCGCATGGGAGACCGCTGCCTCAACAGCCGA TGGTCTCGGCGGCTTCAGCGACAAAGCAGCCTGTTGTTGCCGGAATGGTTGCGGACATGAACGCTAATCCGTACTACCAACAGGTTAGGGTGGTGGAGCA TCAGCAGCAGCAGATGAACGAACGAATTGTGATAGATGCGAAACTGATACAGGCGCAGGCTCATTACGGACCTGCTGGTGCAGCTGCGATAGCTGTTGCA GCACATAGGAATGTGGGGGCTGTTCATTATGGGATGTCTTAG
AA sequence Show only first row Show all	>Lus10013702 pacid=23169075 polypeptide=Lus10013702 locus=Lus10013702.g ID=Lus10013702.BGIv1.0 annot-version=v1.0 MQQDHPRKDLEFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGEKVAIKKIHDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFRDIF VVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFTDTPTTVFWTDYVATRWYRAPELCGS FSSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSMDTISGVRNDKARKYLTEMRKKQPVPFAQKFPTADPLALRLLQRLLAFDPKD RPTAEEALADPYFRGLSKIEREPSCQPISKLEFEFERRRVTKEDIRELLYREILEYHPQLLKDYMSGNEGTNFLYPSAIGHFRKQFAYLEENSGRSAPVI PLERKHVSLPRPTVHASTMPHNMPSSTSVDNHQVTDEVSKNFRGTESNPGNASRTLRPPPRGPTGNAAKPGRVVGSFVQCDGNRNVKDGYLYRNTILPSQ TTATASPPCFFRTNSATRDRDNLSHGRPLPQQPMVSAASATKQPVVAGMVADMNANPYYQQVRVVEHQQQQMNERIVIDAKLIQAQAHYGPAGAAAIAVA AHRNVGAVHYGMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	0	1
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	1.0	0.8986
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	2.8	0.8400
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10014868 [exp]	3.7	0.7407
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	6.0	0.7831
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	8.5	0.7719
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	11.0	0.6765
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	13.4	0.7352
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	13.4	0.7140
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	13.7	0.6912
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	14.1	0.7617

Compare expression of checked genes

Lus10013702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.