Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78510 542 / 0 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT1G17050 536 / 0 SPS2 solanesyl diphosphate synthase 2 (.1) AT2G34630 236 / 5e-71 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT1G53530 217 / 5e-67 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G23465 153 / 2e-43 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 147 / 5e-41 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT4G36810 131 / 3e-33 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 125 / 3e-31 Terpenoid synthases superfamily protein (.1) AT2G18640 120 / 3e-29 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 119 / 3e-29 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005570 [exp] 809 / 0 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 623 / 0 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10005571 [exp] 315 / 1e-104 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10023287 [exp] 241 / 4e-73 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10025393 [exp] 176 / 9e-52 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10033448 [exp] 146 / 3e-41 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10015755 [exp] 119 / 4e-31 AT1G53530 86 / 4e-22 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10022499 [exp] 125 / 5e-31 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 122 / 6e-30 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380500 [exp] 585 / 0 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 422 / 8e-143 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G099500 [exp] 408 / 3e-137 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 391 / 3e-131 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.006G135300 [exp] 236 / 8e-71 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.010G138800 [exp] 234 / 3e-70 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.001G380400 [exp] 218 / 2e-67 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 183 / 4e-54 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 174 / 8e-51 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.004G090600 [exp] 130 / 5e-33 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase CL0299 [flax] [poplar] Peptidase_SF PF10502 [flax] [poplar] Peptidase_S26 Signal peptidase, peptidase S26 CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10013703 pacid=23169036 polypeptide=Lus10013703 locus=Lus10013703.g ID=Lus10013703.BGIv1.0 annot-version=v1.0 ATGGCGTCATTGACATGCCATAACCTTACAACCGTGGTGGGTTGCGCCGCCTCATCTTGGAGTGAAGCTAGATGTTCATGGTGGAACAGACTGGAAAACT CTGTTGCCATCTCCAATGGTGGAATCCACCGTACTGGAAGACTGGTCGCTTCCTGCCTTGACTCTGTTCGCTGTAGAAGCGTTTCGACAAAGAGCGTCGA CGCTCAGCTCAGTGTTTCTCCAGGAGCTTCAGATGTCTTGTTGAATGTGAAAAGAGGTCAGATTTCGTTGACGAAATTGTTTGAAGTGGTAGCTGAGGAC CTGCTGATCCTTAACCAAAATCTTAAAACAATTGTTGGTGCAGAGAACCCAGTTTTGATGTCTGCAGCGGAGCAGATATTTGGTGCCGGAGGGAAGAGAA TGCGACCGGCTCTCGTATTCCTGGTGTCAAGAGCTACAGCTCAAATGTCCGGTTTAAAGGAACTTACAACAAATCACCGACGTCTTGCAGAGATCATTGA GATGATCCATACAGCAAGTCTTATTCATGATGATGTATTGGATGAAAGTGACTTGAGAAGGGGGAAGGAAACAGTTCATCAACTTTACGGCACGAGAGTC GCAGTACTTGCAGGGGACTTCATGTTTGCTCAGTCATCATGGTACTTAGCGAACCTCGAAAACCTCGAAGTCATCAAACTCATCAGCCAGGTTATCAAAG ATTTCGCCAGTGGCGAAATAAAGCAAGCATCCAATTTGTTCGACTGCGACACCGAGCTCGAAGAGTACTTGATCAAGAGCTATTACAAGACGGCATCTTT AGTTGCGGCCAGCACCAAAGGAGCTGCCATTTTCAGCGGAATGGACAGCAATGTTGCTCAGTGTATGTTCGAATACGGCAAGAACCTAGGTTTATCGTTC CAAGTCGTGGATGACATACTCGATTTCACGCAATCAGCCGAGCAGCTTGGAAAGCCTGCCGGAAGCGACCTGGCGAAGGGGAACCTAACCGCACCGGTCA TATTTGCTCTGGAGAAAGAGCCTAAACTTAGAGACATCATTGAGTCTGAATTCGTCGATGAAGGCTCGCTGCAAGAGGCTATCGAGTTGGTGAAGAGGTC TGAGGGGATTCAGAGAGCGCAGGAACTAGCGAGAGAGAAAGCTGACGTTGCTATCCAGAACCTCGAATGTCTTCCTCGAAGCGCATTTCGGTCTGCTCTC GAGGAAATGGATGGTGTTGATCCGGTCTGGACACCGTGCAGGATCGAGCACAGCCAGAAGTGCAGGCACTGGGGTGATGAAAGCCCTCCGAACATAACAA AGCGGCGGAAGTGGGGTAAAGTAAACTGGGAAACTCCACCGGCGGTGACTTTCCAGGCAGTCCAGGACTCCTCCGGCAAATTCCTGGCCGTTCCTTCTTC TCAGATCCGGTGGAGGAACTCGAAACAAGCTGGTCGTCAGCTAATCCCTCTCTCTCTCTCGATTATGAAACTCATGGGCTACTTCAAGCAATGGTCATCC TTTGCACAGGACACCACAGCCAAAGCTTCAATCGCCGCCAAGTTCCTCTCTTTCCTGCACATAACTGATTCCTACATTGTCTCCACCACTCTCGTGCAGG GTCCTAGCATGCTCCCCACATTGAATTTCTCCGGCGACGTGCTTCTAATCGAACACTTGTCTCACCGATTGGGGAAGCTTGAACCTGGAGACATTGTTCT TGTTCGATCCCCAGTTGAACCCAGAAAGATTGTGGCGAAACGAATAGTTGGGATGGATGGTGATCGAGTCACTTTTCTTACTGACCCTTCCCGTAGTGAG AATTCCCGCACTGTTTTGGTTCCAAAAGGGCATGTGTGGATTCAGGGGGACAATGTGTATGCTTCTGCTGATTCAAGATATTTCGGTCCTGTTCCGTATG GTTTGATTCAAGGAAGAGCCTTTTTAAGGGTGACTGTATCTTTCTTTCTTCTTTGGACATTATCTTTACTTGATTTCTTATTCTAA
AA sequence Show only first row Show all	>Lus10013703 pacid=23169036 polypeptide=Lus10013703 locus=Lus10013703.g ID=Lus10013703.BGIv1.0 annot-version=v1.0 MASLTCHNLTTVVGCAASSWSEARCSWWNRLENSVAISNGGIHRTGRLVASCLDSVRCRSVSTKSVDAQLSVSPGASDVLLNVKRGQISLTKLFEVVAED LLILNQNLKTIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAQMSGLKELTTNHRRLAEIIEMIHTASLIHDDVLDESDLRRGKETVHQLYGTRV AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDTELEEYLIKSYYKTASLVAASTKGAAIFSGMDSNVAQCMFEYGKNLGLSF QVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRDIIESEFVDEGSLQEAIELVKRSEGIQRAQELAREKADVAIQNLECLPRSAFRSAL EEMDGVDPVWTPCRIEHSQKCRHWGDESPPNITKRRKWGKVNWETPPAVTFQAVQDSSGKFLAVPSSQIRWRNSKQAGRQLIPLSLSIMKLMGYFKQWSS FAQDTTAKASIAAKFLSFLHITDSYIVSTTLVQGPSMLPTLNFSGDVLLIEHLSHRLGKLEPGDIVLVRSPVEPRKIVAKRIVGMDGDRVTFLTDPSRSE NSRTVLVPKGHVWIQGDNVYASADSRYFGPVPYGLIQGRAFLRVTVSFFLLWTLSLLDFLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	0	1
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	1.0	0.8935
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	2.4	0.8359
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	2.8	0.8519
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	3.5	0.8312
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	5.7	0.8053
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	6.0	0.8015
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	8.4	0.8085
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	9.5	0.7801
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	11.5	0.7824
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	11.5	0.7864

Compare expression of checked genes

Lus10013703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.