Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT2G32050 192 / 2e-62 Family of unknown function (DUF572) (.1) AT3G43250 175 / 9e-56 Family of unknown function (DUF572) (.1) AT2G29430 100 / 2e-28 Family of unknown function (DUF572) (.1) AT1G25682 78 / 1e-17 Family of unknown function (DUF572) (.1) AT1G25988 40 / 0.0002 Family of unknown function (DUF572) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013707 [exp] 321 / 4e-112 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10005575 [exp] 316 / 4e-110 AT1G17130 391 / 1e-136 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10040296 [exp] 80 / 4e-18 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10034268 [exp] 75 / 1e-16 AT1G25682 479 / 2e-172 Family of unknown function (DUF572) (.1) Lus10041495 [exp] 74 / 4e-16 AT1G25682 467 / 1e-166 Family of unknown function (DUF572) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377800 [exp] 300 / 1e-103 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.011G096100 [exp] 295 / 5e-102 AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.010G130300 [exp] 76 / 7e-17 AT1G25682 436 / 3e-155 Family of unknown function (DUF572) (.1) Potri.008G115700 [exp] 76 / 8e-17 AT1G25682 446 / 7e-159 Family of unknown function (DUF572) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04502 [flax] [poplar] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Lus10013706 pacid=23169155 polypeptide=Lus10013706 locus=Lus10013706.g ID=Lus10013706.BGIv1.0 annot-version=v1.0 ATGGGAGAGCGGAAGGTTCTGAACAAGTACTATCCTCCGGACTTCGATCCGGCGAAGCTGCCACGCGCCCGCAGACCAAAGAATCAGCAGATTAAGGTCC GGATGATGCTTCCCATGAGCATCAGATGCAACACCTGCGGTAATTACATCTACATGGGGACGAAATTCAACTCACGCAAAGAAGATGTCGTCGGCGAGAC GTATTTGGGTATACAAATATTTCGATTCTACTTTAAGTGTACGAGATGCTCGGCCGAGCTTGCGATGAAGACTGATCCTCAGAATTCCGATTACATCGTG GAGAGCGGGGCGACGAGGAATTATGAGCCGTGGCGTAAAGAGGATGAGGAATTGGACGGCTTGAAACGGAAGAGAGATGCTGAGGAGATGGGTGATGCGA TGAAGGCTTTGGAGAACAGGACGTTGGATTCCAAACGGGAGATGGATACTTGA
AA sequence Show only first row Show all	>Lus10013706 pacid=23169155 polypeptide=Lus10013706 locus=Lus10013706.g ID=Lus10013706.BGIv1.0 annot-version=v1.0 MGERKVLNKYYPPDFDPAKLPRARRPKNQQIKVRMMLPMSIRCNTCGNYIYMGTKFNSRKEDVVGETYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYIV ESGATRNYEPWRKEDEELDGLKRKRDAEEMGDAMKALENRTLDSKREMDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17130			Family of unknown function (DU...		Lus10013706 [exp]	0	1
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	6.9	0.8097
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	7.5	0.8243
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	14.7	0.8085
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Lus10038568 [exp]	16.0	0.8032
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	21.9	0.7753
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	24.9	0.7900
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	41.6	0.7804
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	44.1	0.7223
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	58.1	0.7156
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	60.3	0.7569

Compare expression of checked genes

Lus10013706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.