Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17140 202 / 2e-62 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) AT1G78430 182 / 9e-55 RIP2 ROP interactive partner 2 (.1) AT3G53350 48 / 5e-06 RIP4 ROP interactive partner 4 (.1.2.3) AT2G37080 45 / 5e-05 RIP3 ROP interactive partner 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005576 [exp] 537 / 0 AT1G17140 238 / 4e-76 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10026482 [exp] 48 / 9e-06 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10015064 [exp] 44 / 0.0002 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1) Lus10023173 [exp] 42 / 0.0005 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377900 [exp] 218 / 4e-68 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1) Potri.016G085900 [exp] 46 / 3e-05 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 45 / 5e-05 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013708 pacid=23169034 polypeptide=Lus10013708 locus=Lus10013708.g ID=Lus10013708.BGIv1.0 annot-version=v1.0 ATGCCTCAGAGGCAATCGACACGAGGTCCACATCCACAAAGGACATCATCCGGCTCTTCAACCGAGCGTAGTAGCCCCAAGGTGGTTTCGTCATCAGATC GCCGCTCACCTCGAGCTGGTGGGCCACATTCTGATCCACCATTGCAGCAAAAGAAGCAGCTTGGCCCAAGGATTGCAGATCTTGAGTCACAACTAGGCCA AGCACAGCAAGAGCTCAAGAGTCTCAAGGACCAGTTGGCTTCCGCGGAGGCTGCTAAGAAGGAAACTCAGAAAGAACTCGAGAGCAAGAAATGCGCCCTA AATCCAGAACCTGAGGAAGCAGAAACACAGCAAAAGCCTTCACAGGATGCTGTTGCAGACGAAAATGATCAGGAGACCGATGTGTTTGAAGTTCCGGTAG ATAAAAAGGCGGTAGTGGAGCTACCAGAGAAGTTGGAGGAGGCAGTAGTAAAGCCTACTTCTGAAGAGGTAGCTTTGAAGGATGAGGAGATAGCTACACT TAAAGCGAAACTAGAAGAGACCGGAAAGGAGTTGGAGGATTCGAATAAGGAGAGGGAAGAGTTGAAGAGCCAGCTGAATGATGCAGCTTCAAGGATGTCA AGTGCAAAGGCAAAGGAAGAGGCTTTGTGCGAAAGATTGAAGCTTTTGGGGCAAGAACTGGAGGGTAGTAAAGGGAACCAGACCGGGTTGAAGTTCGAGC TGGAGAGGGTGAAAGAAGAGAAAGAAGGGTTGGAAGCTGAGATGAAGATGATGAGAGTTCAGACTGAACAGTGGAGGAAAGCAGCAGATGCTGCAGCAGC TGTGCTAGCTGGCGGGAATGGAAGGATGATTGTATCCGAGAGGTGCGCTTCGATGGACAATCACCATGTATTTGAGACGCCAGGTGGCGGGTTTGGGAAC AACGGGTTCGTTGGATCGCCTGGATTTGGCGACAACATTGATGGTGGGTTTGGGAGTGGGAAGCAGCAGCGTAGGGGGTCTGGGATTAAGATGCTTGGTG ACTTGTGGAAGAAGAAACCTCAGAAGTGA
AA sequence Show only first row Show all	>Lus10013708 pacid=23169034 polypeptide=Lus10013708 locus=Lus10013708.g ID=Lus10013708.BGIv1.0 annot-version=v1.0 MPQRQSTRGPHPQRTSSGSSTERSSPKVVSSSDRRSPRAGGPHSDPPLQQKKQLGPRIADLESQLGQAQQELKSLKDQLASAEAAKKETQKELESKKCAL NPEPEEAETQQKPSQDAVADENDQETDVFEVPVDKKAVVELPEKLEEAVVKPTSEEVALKDEEIATLKAKLEETGKELEDSNKEREELKSQLNDAASRMS SAKAKEEALCERLKLLGQELEGSKGNQTGLKFELERVKEEKEGLEAEMKMMRVQTEQWRKAADAAAAVLAGGNGRMIVSERCASMDNHHVFETPGGGFGN NGFVGSPGFGDNIDGGFGSGKQQRRGSGIKMLGDLWKKKPQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	1.0	0.9511
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	1.4	0.9494
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	1.7	0.9428
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10005576 [exp]	2.6	0.9262
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	3.2	0.9156
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	6.9	0.9386
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	7.4	0.9375
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	8.5	0.8963
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	8.5	0.8685
					Lus10018463 [exp]	8.8	0.9144

Compare expression of checked genes

Lus10013708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.