Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78420 342 / 3e-116 RING/U-box superfamily protein (.1.2) AT1G17145 334 / 6e-114 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005577 [exp] 588 / 0 AT1G78420 393 / 6e-135 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G378000 [exp] 406 / 3e-141 AT1G78420 387 / 1e-132 RING/U-box superfamily protein (.1.2) Potri.011G096000 [exp] 393 / 6e-136 AT1G78420 376 / 3e-128 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013709 pacid=23169149 polypeptide=Lus10013709 locus=Lus10013709.g ID=Lus10013709.BGIv1.0 annot-version=v1.0 ATGGGTAATAAGTTGGGAAGGAGGAAGCAAGTGGTGGATGAGAGGTATACAAAGCCACAAGGATTGTATCTCCACAAAGACGTAGACCACAAGAAGCTAA GAAAACTCATACTTGAGTCCAAGCTGGCACCTTGCTATCCCGGAGACGAGGAGCTCTGCAATGATCACGAAGAATGTCCTATTTGTTTCCTGTATTACCC AAGCCTCAACAGGTCAAGATGCTGCCTGAAGGGTATCTGTACAGAGTGTTTTCTGCAGATGAAAAATCCTAATTCAACCCGTCCTACTCAATGTCCTTTC TGCAAAACATCAAATTATGCTGTGGAGTACCGTGGTGTAAAAACGAAAGAGGAAAAGGGCTTGGAGCAAATTGAAGAACAACGAGTAATTGAAGCAAAAT TAAGGATGCGGAAACAAGAACTTCAGGATGATGAAGACAGGATGCAGAAAAGACTAGAATCAAGTTCTTCCAGTTCTAATGTTGCACCTGAAGAGGTTGC ATCTGAAGAGGTTGATTGTGGCTCTTCAGCAGTTTCATCCTATGCAGTTGCAGTCGGAACTGAGGAAACTGTTTCTTCTCGACCTTCTACCAGAGATCCT GTATTGTCAAGACCGAGCAGGGATGGTGAATTTGACCTGGATCTCGAAGATATTATGGTCATGGAGGCAATCTGGCTTTCTATTCAGGAAAATGGCAGAC CTAGGAATTTGGCGTATGATGTTTCGTCCGAGCAATATGCCCCAGAATGCTATTCATCAACCCCGGCAATTCCACCAGTTGTTGGCTCGTCATCATCCCC TTCCGGGGGCCTTGCTTGTGCTATTGCTGCCCTTGCCGAACGCCAGCAGATGGGTGGAGATCCATCTACTTCCATTACAAACGGGAACATCTCCGTGGCG AACTTACTTCCTGGCTGTAACAGCTCTTACAACACGGTGAACCAGCAAGCAAGTAGTTACACTCCAGCAGAGAGTTCCAGCAACGTTTCACCCGACTGCG AAATCTTAGCCACAAAAGATAACAAAAGATAA
AA sequence Show only first row Show all	>Lus10013709 pacid=23169149 polypeptide=Lus10013709 locus=Lus10013709.g ID=Lus10013709.BGIv1.0 annot-version=v1.0 MGNKLGRRKQVVDERYTKPQGLYLHKDVDHKKLRKLILESKLAPCYPGDEELCNDHEECPICFLYYPSLNRSRCCLKGICTECFLQMKNPNSTRPTQCPF CKTSNYAVEYRGVKTKEEKGLEQIEEQRVIEAKLRMRKQELQDDEDRMQKRLESSSSSSNVAPEEVASEEVDCGSSAVSSYAVAVGTEETVSSRPSTRDP VLSRPSRDGEFDLDLEDIMVMEAIWLSIQENGRPRNLAYDVSSEQYAPECYSSTPAIPPVVGSSSSPSGGLACAIAALAERQQMGGDPSTSITNGNISVA NLLPGCNSSYNTVNQQASSYTPAESSSNVSPDCEILATKDNKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	2.4	0.8330
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	5.5	0.8539
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	10.8	0.8414
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	15.0	0.8101
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	17.3	0.7907
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	20.4	0.8094
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	22.4	0.7574
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	25.5	0.7684
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	29.0	0.8278
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	30.7	0.7849

Compare expression of checked genes

Lus10013709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.