Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 247 / 6e-83 unknown protein AT4G18650 113 / 1e-30 transcription factor-related (.1) AT4G18680 85 / 7e-20 unknown protein AT4G18690 86 / 8e-20 unknown protein AT1G58330 77 / 5e-17 ZW2 transcription factor-related (.1) AT5G45830 76 / 6e-16 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT5G65210 74 / 2e-15 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G06960 73 / 6e-15 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G77920 72 / 2e-14 bZIP bZIP transcription factor family protein (.1) AT1G22070 71 / 4e-14 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005579 [exp] 232 / 6e-77 AT3G14880 121 / 1e-33 unknown protein Lus10013746 [exp] 156 / 7e-47 AT3G14880 141 / 5e-41 unknown protein Lus10039193 [exp] 149 / 4e-44 AT3G14880 135 / 5e-39 unknown protein Lus10039196 [exp] 146 / 7e-43 AT3G14880 135 / 1e-38 unknown protein Lus10042453 [exp] 142 / 4e-41 AT3G14880 145 / 3e-42 unknown protein Lus10015276 [exp] 106 / 2e-27 AT4G18690 204 / 6e-65 unknown protein Lus10028231 [exp] 97 / 2e-24 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10007282 [exp] 94 / 5e-23 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10029229 [exp] 86 / 5e-20 AT4G18650 207 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390100 [exp] 318 / 5e-111 AT3G14880 255 / 3e-86 unknown protein Potri.007G098800 [exp] 156 / 2e-46 AT3G14880 159 / 6e-48 unknown protein Potri.004G058200 [exp] 95 / 2e-23 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.005G082000 [exp] 77 / 4e-16 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 74 / 4e-15 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 73 / 4e-15 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.016G049200 [exp] 74 / 7e-15 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G058800 [exp] 73 / 9e-15 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 71 / 6e-14 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.006G039000 [exp] 68 / 6e-13 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013711 pacid=23169116 polypeptide=Lus10013711 locus=Lus10013711.g ID=Lus10013711.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCGGGGAGCTTCAACGGCAATGGGAGTGGGACCAGCAGCAACTTCAGCAGGTTCTACGAGAGATGGTTCGACCAGCTTCACCAAATGG TCCGACAGCTCCGACTGTCTCCCAACCCGCCGACTACCCACGACCACCGCGCCTCCATCTCCCACCTCGTCCAGAAGATCATGTCCCACTACGCCGAATA TTACCAGGTGAAGTCTGCTGCGGCAGAGGGGGACGTGCTACTGATGTTCACTGCACCGTGGGCCTCCTCCCTGGAGCGATCCCTGCACTGGGTCGCAGGG TGGAGGCCCACAACTCTTTTCCACCTAGTGTACACGGAGTCGAGCATACTGTTCGAGTCCCACATCGTGGACATCCTCAAGGGGATGAAAACTGGGGACC TAGGAGACCTCTCCCCTGCCCAGTTCAGGAGGGTGAGCGAGCTGCAATGCGACACGGTGAAGGATGAGAACTCAATTACGGACGAGCTTTCCGAGTGGCA GGACGGGGCGAGTGAGCTGGTGGGGTGTGCGGCGGAGGAGGTGGAGAGGAAAGTGAGGAAGCTGGTCGGCATACTTAGGAAGGCCGACGACCTGAGGTTG AAGACAGTGAGGCGGGTGGTGGAGCTGCTGACTCCGCAGCAGGCTGTCGAGTTCTTGATTGCCGCGGCGGAGTTGCAGTTTGGGGTTCGTAGGTGGGGCC AGGATCAAGATGGTCATCACCGCAGCTGA
AA sequence Show only first row Show all	>Lus10013711 pacid=23169116 polypeptide=Lus10013711 locus=Lus10013711.g ID=Lus10013711.BGIv1.0 annot-version=v1.0 MAAAAGSFNGNGSGTSSNFSRFYERWFDQLHQMVRQLRLSPNPPTTHDHRASISHLVQKIMSHYAEYYQVKSAAAEGDVLLMFTAPWASSLERSLHWVAG WRPTTLFHLVYTESSILFESHIVDILKGMKTGDLGDLSPAQFRRVSELQCDTVKDENSITDELSEWQDGASELVGCAAEEVERKVRKLVGILRKADDLRL KTVRRVVELLTPQQAVEFLIAAAELQFGVRRWGQDQDGHHRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10013711 [exp]	0	1
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	3.2	0.9986
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	3.2	0.9990
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	4.5	0.9990
					Lus10009618 [exp]	5.5	0.9990
					Lus10032670 [exp]	5.7	0.9748
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	6.3	0.9990
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	6.6	0.9882
					Lus10005830 [exp]	7.1	0.9990
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	7.7	0.9890
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	7.7	0.9990

Compare expression of checked genes

Lus10013711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.