Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17080 158 / 5e-50 Ribosomal protein L18ae family (.1) AT1G53560 115 / 3e-33 Ribosomal protein L18ae family (.1) AT1G29970 105 / 3e-29 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G14595 84 / 3e-21 Ribosomal protein L18ae family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005580 [exp] 256 / 2e-88 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10028130 [exp] 92 / 2e-23 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3) Lus10026193 [exp] 73 / 1e-16 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 72 / 9e-16 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1) Lus10042485 [exp] 48 / 2e-07 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10013704 [exp] 46 / 3e-06 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10026180 [exp] 45 / 6e-06 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10005572 [exp] 45 / 7e-06 AT1G29970 88 / 4e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10005573 [exp] 42 / 1e-05 ND 47 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 168 / 8e-54 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013712 pacid=23169040 polypeptide=Lus10013712 locus=Lus10013712.g ID=Lus10013712.BGIv1.0 annot-version=v1.0 ATGAGTGAAGGAGACACGAAGAACCGAGGGGTTGTTGTAGGTCATCAGCACCACCCCCCTTCTCCGCCTCCACAGTTCAGCGGGGTTGTTGTAGATCACC AGCACCACTCGCCTTCTCAGCCTCCACAGTACGGTACCTTCCAAGGCGTTGCTAACTATCCTCCGCCGCTTCCGCAGCAGCCGGTCATCGGCTTCCCTCA GCCGGTTGCTCCTCCCGGGTCTCACTCCTCCTCCATCCCTCCGTACTATGGCCAAGGCTACCAAACCGTCCCTGGATATGCCGTTGCTGAAGGAAGACCT GTAAGAGAGCGCCGGCTTCCTTGCTGTGGTCTTGGTCTCGCCTGGGTTCTGTTCATAATTGGATTCTTCCTTGGCGCCATTCCCTGGTATCTTGGGCTGT TTGTTCTTCTCTGTGCAAGGATAGATCCCCGGGAGAAGGCAGGATACGTTGCTTGCACAATCGCTGCATTGATAGCGACAGTAGCGATCGTGTTCGGTGC GACAAAGGGAGCTGAAGTATGGTGA
AA sequence Show only first row Show all	>Lus10013712 pacid=23169040 polypeptide=Lus10013712 locus=Lus10013712.g ID=Lus10013712.BGIv1.0 annot-version=v1.0 MSEGDTKNRGVVVGHQHHPPSPPPQFSGVVVDHQHHSPSQPPQYGTFQGVANYPPPLPQQPVIGFPQPVAPPGSHSSSIPPYYGQGYQTVPGYAVAEGRP VRERRLPCCGLGLAWVLFIIGFFLGAIPWYLGLFVLLCARIDPREKAGYVACTIAALIATVAIVFGATKGAEVW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	0	1
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	1.0	0.9547
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	3.5	0.9024
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	6.3	0.8903
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	6.9	0.8699
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	8.1	0.8996
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	8.5	0.8981
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	9.5	0.8744
AT1G07040			unknown protein		Lus10030795 [exp]	9.5	0.8808
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	11.0	0.8442
AT5G17280			unknown protein		Lus10041805 [exp]	11.4	0.8424

Compare expression of checked genes

Lus10013712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.