Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53700 428 / 4e-147 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) AT3G14370 416 / 3e-142 WAG2 Protein kinase superfamily protein (.1) AT5G58140 212 / 2e-60 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 211 / 7e-60 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G26700 159 / 3e-43 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 156 / 3e-43 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G36350 162 / 4e-43 Protein kinase superfamily protein (.1) AT5G40030 155 / 4e-42 Protein kinase superfamily protein (.1) AT5G03640 159 / 5e-42 Protein kinase superfamily protein (.1) AT3G52890 159 / 7e-42 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005583 [exp] 380 / 2e-130 AT1G53700 360 / 2e-122 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Lus10022534 [exp] 245 / 7e-75 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10036150 [exp] 233 / 3e-72 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10028208 [exp] 232 / 3e-69 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10026572 [exp] 219 / 5e-63 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 211 / 5e-60 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036144 [exp] 196 / 1e-54 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10001355 [exp] 172 / 1e-46 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10030051 [exp] 166 / 1e-45 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139800 [exp] 429 / 4e-147 AT1G53700 514 / 3e-180 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.001G435900 [exp] 395 / 3e-134 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.001G342000 [exp] 217 / 4e-62 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 202 / 8e-57 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.015G093400 [exp] 164 / 3e-45 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G114900 [exp] 164 / 1e-43 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 158 / 1e-41 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 155 / 4e-41 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 155 / 4e-41 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 155 / 7e-41 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013715 pacid=23169103 polypeptide=Lus10013715 locus=Lus10013715.g ID=Lus10013715.BGIv1.0 annot-version=v1.0 ATGGACGAAGCTCAAGATTACTACGATCACGATAGTTTCCCCGGAGACACGGATCTCGATTTCAGCTTCACATCTACTGTCACTGACCGGACTTTCGCTT CCTCCAGTGCTCGTTCCAGCCTCGCTCGTTCCAGCTTAAACCTCAGCTTCAACGAGCGCCTCTCCACCACTTCCTCCGGCGCCGTCAGCGCCGCGCCTTC CTCCTGCTCCAACTCCTACGATTCGCTTCACCACCGGAGGTCTGACCCTCACTGGTCGGCGATCATGACGACGACGAACCTGTCATCCGATGGACGGCTC CACCTCCGCCATCTCAAGCTGCTCCGCCACCTCGGGGCGGGGAATTTGGGCAGGGTTTTCCTCTGTAAAATTAGGGATTGCAGCGACGGCTCCCAATTCG CGCTCAAGGTTGTGGACAGAGACACTCTGAGCAAGAAGAAGCTGTCTCACGTTCAGATGGAGGCGAAAATCCTCTCCCTGCTCGACCACCCTTTCCTCCC TACGCTCTACGCTCGAATCGACGTCTCTCACTACACCTGTCTCTTGATTGATTACTGCTCCAACGGCGATTTGCACTCTGTTCTCCGGAAGCAGCCGGGG AACTGCTTCCCCGTCGCCGCCGTCAAGTTCTTTGCTGCTGAGGTACTCGTCGCGCTCGAGTATCTCCACGCGAAGAGGCAGCGGCTGCTCGGGTGTGGAG GGATGAGAGTGGAGGACAAAGTGAGGGCGGCCCCGATCGTCGAAGAGCCGACGGCAGCATTCTCGAGCTCCTGCGTCGGTACGCACGAGTACCTGGCACC GGAGATCCTTTCCGGGAACGGCCACGGCAACAGCGTCGACTGGTGGGCGTTCGGAGTGCTGATCTACGAGCTGCTCTACGGCACTACGCCGTTTAAGGGA GGGAGCAAGGAGAGCACGCTCCGGAACATCGCATCGACCAAGCAGCTGACGTTTCCTCCGGCGGAGGGGATGGAGGAGGTGCAGGATCTGATCGACAAGC TACTTGTGAAAGATCCTAGGAGAAGACTGGGGAGCAGCAAAGGCGCGACGGACATAAAACGGCACCGTTTCTTCGAGGGAGTGAAGTGGCCGTTGATCAG GAACTACAGCCCGCCGGAGCTGCGAGGAGTGGCGGTGAAGAGAACACGTGGCGGTCACGTGATGACGGTGTCGCCGAGAAGGCGGGGTCACGTGATGACA GTTTCGCCGAGAAGGCGGAGCGGGTGCGTTAAGGTACTGGAGTACGTTTTCAGGAGGAAGAAACGATGCCGTTTCCAGTTCTGGAATTCTTCGAATTCGA ACCATCAAGCCACCAGTAATTGCAATTACTATCAGTATAGAGTTAAAGACACCTGA
AA sequence Show only first row Show all	>Lus10013715 pacid=23169103 polypeptide=Lus10013715 locus=Lus10013715.g ID=Lus10013715.BGIv1.0 annot-version=v1.0 MDEAQDYYDHDSFPGDTDLDFSFTSTVTDRTFASSSARSSLARSSLNLSFNERLSTTSSGAVSAAPSSCSNSYDSLHHRRSDPHWSAIMTTTNLSSDGRL HLRHLKLLRHLGAGNLGRVFLCKIRDCSDGSQFALKVVDRDTLSKKKLSHVQMEAKILSLLDHPFLPTLYARIDVSHYTCLLIDYCSNGDLHSVLRKQPG NCFPVAAVKFFAAEVLVALEYLHAKRQRLLGCGGMRVEDKVRAAPIVEEPTAAFSSSCVGTHEYLAPEILSGNGHGNSVDWWAFGVLIYELLYGTTPFKG GSKESTLRNIASTKQLTFPPAEGMEEVQDLIDKLLVKDPRRRLGSSKGATDIKRHRFFEGVKWPLIRNYSPPELRGVAVKRTRGGHVMTVSPRRRGHVMT VSPRRRSGCVKVLEYVFRRKKRCRFQFWNSSNSNHQATSNCNYYQYRVKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	1.0	0.9591
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	2.8	0.9544
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	3.3	0.9305
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	4.5	0.9150
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	4.6	0.9471
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	5.7	0.9468
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	5.7	0.9174
AT5G66440			unknown protein		Lus10041775 [exp]	5.9	0.9384
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	6.7	0.9206
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	7.1	0.9165

Compare expression of checked genes

Lus10013715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.