Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78540 613 / 0 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) AT1G17040 612 / 0 STATLA, ATSHA STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, SH2 domain protein A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005584 [exp] 1326 / 0 AT1G78540 605 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380900 [exp] 816 / 0 AT1G78540 592 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) Potri.011G102100 [exp] 816 / 0 AT1G78540 591 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2) Potri.008G139800 [exp] 46 / 2e-06 AT1G78540 51 / 4e-09 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013716 pacid=23169087 polypeptide=Lus10013716 locus=Lus10013716.g ID=Lus10013716.BGIv1.0 annot-version=v1.0 ATGGGTTACGACACTATAAAAAACGAAGACTACACCTCGCTAAAGGAATTTAGGGTGGATATTGAGGTGGCGAAGGGAGAAGAGGAAAACGAGGCAGAGA GGAAATTTTCAGTGTGCTTCTGGCTTTACCTCGTCAAAAGCTGCAGCTCTGTTTCGTACCCCGCTCCGATAATCAACCAGGTTGGCTCGGATGTTGACTT CATTGCTCCTTTCCTTTTCCTGAATGAAAGGAGGATAATGATGATACGTCCACTGTGTCTCGTACGGAAAGACAGTCCTCCACATACTGATTCTGATTCA TCGCTTGAGACACCTCATGCATCAATGGCAAATGAGTTCCCATTGGAGAAGTGGGTTCATGTTGGATGCGAAGTTTCTGCCAATGTTCTGCATCTTCATA TTAACGGCGAAAATCTTGTGGAGCTGTGTTTTCAATTACCGTCCATGACCCAGTCTAACTCAGATGGTTTAAAGACGATAACTTTAGTTGGTCCTAGTAT GGATAATTGTTTGCAAGGTTATGTTCACAGTGCGCAAGTCTCACACATAAGTTCATCTGTCAGGGACTGCTATTTTAAGGATCCACCTCTTCAGTTATCT ATTGATAACTCATCTACCATTGAGATTGAAGAAGACAATGATGGCATCTGGAGTATTGTTGGCGGGAAGGCTTCTTGTCGCAGGATATTTTCCCTGGATG TTGTTCTGCTAAATGCAATTAACCAATCCATTAACAAGGAACTGGAGGTTATTTCTTCCCTTATATATGCTGATAATGGACTACCAGTGGAGAAGACATC TGATGATGAAGCTCCTCTTCTGACAAGTTTTGATGGCATTGAATTTCCTTCTTGTGATAGGACAAGTAAACTATTGAATGGCCGCACGTCCTTCAAGCTC AAGATTTCCCAGCTCTCCTCCAAGTGTGAAAATAGGCTATTTTACATCAAGTTTGAGCTTCCGAAATACAAAGGTTATCGTTTTCTCGAGGCATTTTCTC ATCCTATTCGTTGTATATCCCGTAACCGGTATCCACGACCATTATCTGCCACATTGAGAAGACCAACATCTGCTCAATATTCTTTGAGTGAGTGTCCATC AATTGCATCAGACAATGGATCTCTGGAACTGCACAACTCTCTTCATGAAGGAGACGCTACCCCATCGTCAAAAAGATTTAAATTGGTTCAAGAGCAAACA TCTGCAGCACCTCAAATGGAGGAGGAACGCCATTCTCAAGGTTTCGCGGCTAATCAGGCTGAGGCAATGGAACTGGTAGAAGCAGGGAACTCTCCATCTG AGTCAGAGAGTACAGAAGAGAGAATTTCAGACTACAATATTGAATCGAATACTCAATATTCAATTCCAGATCCTATGATTTTCAAATACTGCCTTGGTAG TTCGACTGACCGTGCCCTACTGATGAAAGATGTTTCAACCTCAGCCTCCGATGAAGAGCTTTTCAGATTTGCAGATAAGGTCTCTCTGTACTCAGGATGT GCCCATCACAGGCATTCGATTGTTATTGGGAAGAAGTTAATAGAGGAAGGGACAAGACTGTGGAATTCAATCACTCAACAGAACCACCCTGCCCGGTGGG GGAATATAGTTTTCGAAATAGAGAAGCAATTCATGAAGATTGCTTCTTGCAGTACTAGATCTCTGGTAGAACAGGACTATGATCTTCTCAGGAGAATCGC TGGATGCCGCGAGTACATGGCTCAAGAGAACTTCGAGAAGATGTGGTGTTGGCTTTACCCTGTCGCTTGTACACTATCAAGAGGCTGGGTGAACTCATTG TGGAAATGTTCATCCCCCAAGTGGATAGAAGGATTTATCACCAAGGAAGAAGCAGAGTTGTCACTTCGAGGCGCAAGAGGCCTTCAGGAGCCAGGCACTT TCATACTGCGGTTTCCTACTTCGAGGTGCTGGCCCCACCCTGACGCTGGTGGCTTAGTGGTAACATATGTTGGAAGCGATTACTCAATACATCACCGGCT GCTTTCATTCGAGTACATCAATAGCAGCAACGAAAGGCAAAGAAGTGTGAAGCAAGTGCAGGAGATGCTACTGGCAGAGCCAGAACTGTGTCGATTGGGA AGGCAAGCCTCTTGA
AA sequence Show only first row Show all	>Lus10013716 pacid=23169087 polypeptide=Lus10013716 locus=Lus10013716.g ID=Lus10013716.BGIv1.0 annot-version=v1.0 MGYDTIKNEDYTSLKEFRVDIEVAKGEEENEAERKFSVCFWLYLVKSCSSVSYPAPIINQVGSDVDFIAPFLFLNERRIMMIRPLCLVRKDSPPHTDSDS SLETPHASMANEFPLEKWVHVGCEVSANVLHLHINGENLVELCFQLPSMTQSNSDGLKTITLVGPSMDNCLQGYVHSAQVSHISSSVRDCYFKDPPLQLS IDNSSTIEIEEDNDGIWSIVGGKASCRRIFSLDVVLLNAINQSINKELEVISSLIYADNGLPVEKTSDDEAPLLTSFDGIEFPSCDRTSKLLNGRTSFKL KISQLSSKCENRLFYIKFELPKYKGYRFLEAFSHPIRCISRNRYPRPLSATLRRPTSAQYSLSECPSIASDNGSLELHNSLHEGDATPSSKRFKLVQEQT SAAPQMEEERHSQGFAANQAEAMELVEAGNSPSESESTEERISDYNIESNTQYSIPDPMIFKYCLGSSTDRALLMKDVSTSASDEELFRFADKVSLYSGC AHHRHSIVIGKKLIEEGTRLWNSITQQNHPARWGNIVFEIEKQFMKIASCSTRSLVEQDYDLLRRIAGCREYMAQENFEKMWCWLYPVACTLSRGWVNSL WKCSSPKWIEGFITKEEAELSLRGARGLQEPGTFILRFPTSRCWPHPDAGGLVVTYVGSDYSIHHRLLSFEYINSSNERQRSVKQVQEMLLAEPELCRLG RQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10013716 [exp]	0	1
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	6.8	0.8311
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	8.7	0.8380
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	11.8	0.7971
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	17.7	0.8068
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	20.8	0.7804
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	27.0	0.7972
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	27.9	0.7725
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	28.2	0.8091
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	40.6	0.7818
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	47.3	0.7496

Compare expression of checked genes

Lus10013716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.