Plant FIBer expression Database

Lus10013717 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53645 223 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005585
[exp]
276 / 2e-91 AT1G53645 199 / 4e-57 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G137000
[exp]
240 / 2e-78 AT1G53645 239 / 7e-73 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Lus10013717 pacid=23169069 polypeptide=Lus10013717 locus=Lus10013717.g ID=Lus10013717.BGIv1.0 annot-version=v1.0
ATGGGTGGTAGAGTTCTTCCATCACCTTTGGAGGATGAATTCCTGGATGCTTTGGATCTCAATTTCAAGATCGAGTTTGAGGAAGAATACATGTTCGGAG
AGTTTGATCTAAACCCAGATATCGATGAGAAACCACCTATGCCTTTGCGGGATATGCTGGAGAAAGTGAAGCCATTCTTGATGTCTTATGAAGGAATCCA
GAGTCAAGCAGAGTGGGAGGAGGTGATGGAAGAAACTATGAAGAATGTCCCATTATTGAAAACGATAGTTGATCACTACGCTGGACCTGATAGGGTAACA
GCGAAACAACAACAACAAGAGCTAGAAAGAGTTGCAGGAACTTTACCTGCAATTGCTCCTCCTTCCGTGAAACGTTTTGCTGATCGAGCTGTTATGTCTC
TTCAGAGCAATCCAGGGTGGGGATTTGACAAGAAGTGCCAGTTCATGGACAAGCTAGTCATGGAGGTGTCTCAGCATTACAAGTGA
AA sequence
>Lus10013717 pacid=23169069 polypeptide=Lus10013717 locus=Lus10013717.g ID=Lus10013717.BGIv1.0 annot-version=v1.0
MGGRVLPSPLEDEFLDALDLNFKIEFEEEYMFGEFDLNPDIDEKPPMPLRDMLEKVKPFLMSYEGIQSQAEWEEVMEETMKNVPLLKTIVDHYAGPDRVT
AKQQQQELERVAGTLPAIAPPSVKRFADRAVMSLQSNPGWGFDKKCQFMDKLVMEVSQHYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53645 hydroxyproline-rich glycoprote... Lus10013717
[exp]
0 1
AT1G32260 unknown protein Lus10030982
[exp]
8.2 0.6527
AT5G60670 Ribosomal protein L11 family p... Lus10015085
[exp]
12.9 0.7372
AT5G60670 Ribosomal protein L11 family p... Lus10026506
[exp]
17.5 0.7223
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Lus10018063
[exp]
24.1 0.7070
AT5G60670 Ribosomal protein L11 family p... Lus10023186
[exp]
26.2 0.7170
AT3G49080 Ribosomal protein S5 domain 2-... Lus10038852
[exp]
27.1 0.6743
AT1G70600 Ribosomal protein L18e/L15 sup... Lus10039528
[exp]
36.9 0.6797
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Lus10011770
[exp]
40.3 0.6979
AT4G10750 Phosphoenolpyruvate carboxylas... Lus10000224
[exp]
42.1 0.6859
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10021244
[exp]
50.2 0.6469

Lus10013717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.