Plant FIBer expression Database

Lus10013718 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005585
[exp]
134 / 3e-35 AT1G53645 199 / 4e-57 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10013718 pacid=23169035 polypeptide=Lus10013718 locus=Lus10013718.g ID=Lus10013718.BGIv1.0 annot-version=v1.0
ATGGCTGATTGCTGTGGAACTCAATTCGATTCCCCCAATGAGAGGAAGAGGCTTTACGATCCCTACCAATTTCATCGGAAGCCATGCTTCCAGGAACTCT
CCGTCCTTATTCTCTCCCTTCTCCACTTCCGCCGGTGGCCGAGGCCGCGGCAGTGGCGGCGGCGGCCGTGGTCAGATCTTTACTCCCGGCCAGTTCTCCT
TCGCTGCCGACACACCCGCTGCAGACGAGGAGCCCCCCCGGCCGCCCCCGCCGTCGGACGCGGTAGAGGCGTCGGAGCTGCTGAAGGACCGCGACCCAGT
CGACCTGCAGGGGAGAAGGTGCAGCAGACCGCACCTGGCCAGCCGCCGAAAAGCTCCGTTCCGTCGAACGAGCCTTATCTGCCGCCGAGTTTGAGGTCTA
CTCTACATAGCTTCGGTCGAGGGAAATCCGATACACCGGTGGCTCCTGGCATACCGGAGAAGGAAGTGAATCGGCATATTCGTAGTCCTAGGGTTAAGCC
GAGAGCAGATGGCGATGCTGATGGTGTGGCTGGAGAGCAGATTCAGCGGAGGCCGAGATTCAACCAGGATTCGTCGTCGTCGGCGGCGGTGGGTGAGAGG
CTTCGTGTGCGTCGGCGGCGGTGGGTGAGAGGCGAGGTGGAGCAGAAGGAAGTGAAGGGAGGAGAAGAGGCGGCGAGGGAGGAATGCAGCAGATGGGAGG
GAGAGGACGTGGAATGGGAATGGGGAGAGACAGAGGAAGGGGAATGGGGAGAGGGAGAGGGAGAGGTAGAGGTAGGGGAAGGGAGAGAGGAGAGTACGGT
GGCCGGGGGAGAGGTGATATGGGCGGTGAAGATTCAGATGAAGGAGATGAAATTGAATTGGGTAACAATGCTGATGGGGAGAAGCTTGCGCAAACAGTCG
GTGTTGAGTTCATGA
AA sequence
>Lus10013718 pacid=23169035 polypeptide=Lus10013718 locus=Lus10013718.g ID=Lus10013718.BGIv1.0 annot-version=v1.0
MADCCGTQFDSPNERKRLYDPYQFHRKPCFQELSVLILSLLHFRRWPRPRQWRRRPWSDLYSRPVLLRCRHTRCRRGAPPAAPAVGRGRGVGAAEGPRPS
RPAGEKVQQTAPGQPPKSSVPSNEPYLPPSLRSTLHSFGRGKSDTPVAPGIPEKEVNRHIRSPRVKPRADGDADGVAGEQIQRRPRFNQDSSSSAAVGER
LRVRRRRWVRGEVEQKEVKGGEEAAREECSRWEGEDVEWEWGETEEGEWGEGEGEVEVGEGREESTVAGGEVIWAVKIQMKEMKLNWVTMLMGRSLRKQS
VLSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10013718
[exp]
0 1
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Lus10032704
[exp]
5.1 0.8626
AT5G56090 COX15 cytochrome c oxidase 15 (.1) Lus10033332
[exp]
5.3 0.8502
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Lus10012920
[exp]
8.7 0.8597
AT1G26460 Tetratricopeptide repeat (TPR)... Lus10004649
[exp]
9.6 0.8667
AT3G18610 ATNUC-L2, PARLL... PARALLEL1-LIKE 1, nucleolin li... Lus10017403
[exp]
15.4 0.8590
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Lus10022870
[exp]
15.5 0.8572
AT3G03060 P-loop containing nucleoside t... Lus10031211
[exp]
25.0 0.8521
AT3G07050 NSN1 nucleostemin-like 1, GTP-bindi... Lus10028574
[exp]
26.1 0.8441
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Lus10021430
[exp]
27.9 0.8367
AT5G64950 Mitochondrial transcription te... Lus10029199
[exp]
31.3 0.8350

Lus10013718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.