Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49010 350 / 1e-124 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) AT5G23900 330 / 2e-116 Ribosomal protein L13e family protein (.1) AT3G48960 312 / 2e-109 Ribosomal protein L13e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005586 [exp] 389 / 6e-140 AT3G49010 352 / 3e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10009578 [exp] 387 / 4e-139 AT3G49010 351 / 5e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10020398 [exp] 387 / 4e-139 AT3G49010 351 / 5e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131000 [exp] 349 / 4e-124 AT3G49010 353 / 7e-126 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.003G102800 [exp] 346 / 5e-123 AT3G49010 347 / 2e-123 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.013G027600 [exp] 345 / 2e-122 AT3G49010 347 / 4e-123 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.016G082300 [exp] 345 / 2e-122 AT3G49010 343 / 5e-122 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01294 [flax] [poplar] Ribosomal_L13e Ribosomal protein L13e
Representative CDS sequence Show only first row Show all	>Lus10013719 pacid=23169097 polypeptide=Lus10013719 locus=Lus10013719.g ID=Lus10013719.BGIv1.0 annot-version=v1.0 ATGAAGCACAACAACGTTATCCCTAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCTGCTCGCAAGACCCGCAGAC GTGTTGCTCGTCAAACCAAGGCAGTGAAAATCTTCCCTAGACCTACCGCTGGTCCTCTTCGTCCAATTGTCCATGGGCAGACTCGCAAGTACAACATGAA GTTGAAGGCTGGCAGAGGGTTCACTCTTGAAGAGCTCAAGGCCGCTGGTATCCCAAAGAAGCTTGCACCTACCATCGGAATTGCAGTTGACCACAGGAGG AAGAACCGATCCCTTGAGGGTCTTCAGGCCAATGCCCAGAGGCTGAAAACCTACAAGGCAAAGCTTGTGGTCTTCCCAAGGCGTGCTCGCAAGGTCAAGG CTGGTGATTCTGCACCTGAGGAGTTGGCGACTGCCACTCAAGTCCAGGGAGACTTCTTGCCCATCCAACGCGAGCAGCCCACCGTTGAGCTTGTTAAGGT TACTGCTGAGATGAAGGCGGTCAAGGCCTACGACAAGCTGAGGCTAGAGAGGACTAACCAGCGCCACCAGGGAGCTAGGCTGAAGAGGGCTAAGGAAGCT GAGAAGGACGAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10013719 pacid=23169097 polypeptide=Lus10013719 locus=Lus10013719.g ID=Lus10013719.BGIv1.0 annot-version=v1.0 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQTKAVKIFPRPTAGPLRPIVHGQTRKYNMKLKAGRGFTLEELKAAGIPKKLAPTIGIAVDHRR KNRSLEGLQANAQRLKTYKAKLVVFPRRARKVKAGDSAPEELATATQVQGDFLPIQREQPTVELVKVTAEMKAVKAYDKLRLERTNQRHQGARLKRAKEA EKDEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10013719 [exp]	0	1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	2.0	0.9560
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	3.9	0.9449
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	4.0	0.9480
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	6.6	0.9333
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	6.7	0.9289
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	7.0	0.9153
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	9.2	0.9164
AT5G60670			Ribosomal protein L11 family p...		Lus10037402 [exp]	10.2	0.9045
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	13.3	0.9010
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	13.9	0.8948

Compare expression of checked genes

Lus10013719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.