Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 294 / 9e-95 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 272 / 8e-86 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 88 / 1e-18 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 87 / 2e-18 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 80 / 4e-16 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT1G53830 74 / 5e-14 ATPME2 pectin methylesterase 2 (.1) AT2G45220 73 / 7e-14 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 72 / 2e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 72 / 2e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 71 / 4e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005587 [exp] 546 / 0 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033486 [exp] 215 / 1e-64 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 109 / 9e-26 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10037458 [exp] 88 / 1e-18 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10039314 [exp] 84 / 2e-17 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 82 / 7e-17 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 81 / 2e-16 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033399 [exp] 79 / 1e-15 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10029868 [exp] 77 / 5e-15 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061500 [exp] 323 / 1e-105 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.007G107300 [exp] 251 / 4e-78 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 86 / 4e-18 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.010G109400 [exp] 83 / 4e-17 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G002800 [exp] 81 / 3e-16 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 80 / 4e-16 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G002650 [exp] 79 / 1e-15 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 79 / 1e-15 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.012G126800 [exp] 78 / 1e-15 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 77 / 3e-15 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10013720 pacid=23169105 polypeptide=Lus10013720 locus=Lus10013720.g ID=Lus10013720.BGIv1.0 annot-version=v1.0 ATGCCGCCGACGCCTCCACCATCCAAAAAGTACTCCAAATTCCCTTCCACCACAACCATTTCTCTGCATCACATTTTCATGGCTTCCCTCCTCACTCTCC TCCTCGTCTCATTCCTCCTCTTCCTTTCTTTCCCTTCTTCCTCCTCCTCTCTATCTCAACCCCGATCCCTCCGCATTTTCCGATCCCCAAAACCCAAACC CAAATCAAAACCCCCCGTCACTCGCTCTTCCTCCGCCGCACCAATCCCAGCTCAGATCCTCCAAGCATGCAAAGCAACCCGTTTCCCGGACGTATGCCAG TCTTCCTTAGCCGCCAATTCCCCATCCAAAACCCAACAAACTCCGATTGACCTGATTCAATCGGCGATCTCCCTCTCCTCCGCCAATCTATCCGCCGCCC AGTCGATGGTCAAGTCCATTCTCGACTCCTCCTCCGGAAATATCAACCGCACCACCGCAGCCAATAACTGCATCGAAGCCCTCGCCAACTCCAAGTACAG AACGGACTCCGCCGCCGCCGTCGAAGCCCTCCGTCGGTTCGGCGGCGGAGGAATCAAAGATGCCCGCGCGTGGTTGAGCGCGTCGCTGCTTTACCAATAC GACTGCTGGAACGCGCTGAAGTACGCGAACGACACGTCGGAGACTGCTCAAACGATGTCGTTTATCGACGCATTGCAGACCCTCACCAGCAACGCGCTCA GCTTGATCGTTTCCTACGACATTCACGGGAATGAGACCGGGTCATGGGCCCCGCCCAAGACGGAGCGGGACGGGTTCTGGGAGGAGTCGTCGGTCGGGTC GGAAAATCACCCGGGACCCGGGTTTCCACCGGGCTTGAACACGGACGCGACGGTGTGTAAAGAAGGGTGTGATTATAAAACAGTACAAGCGGCGGTGGAT GCTGCGCCGAATAATCTGCCGTCTGGGAAGAAGTTTGTCATCAAGATAAAGGAAGGAGTTTACAAGGAGATCGTCCGGGTTCCATTGGAGAAGAGGAATT TGGTGTTCCTCGGAGATGGGATTGGGAAAACCGTTATAACGGGGTCGTTGGCCGTCGGGCAACCCGGGATATCCACTTACAACACTGCTACCGTCGGTAA GCCTTCTAGTCCACTAAACTTTTCGAGAACGATTCTTTTTGTCAACGGCCCTAAAAGGTGA
AA sequence Show only first row Show all	>Lus10013720 pacid=23169105 polypeptide=Lus10013720 locus=Lus10013720.g ID=Lus10013720.BGIv1.0 annot-version=v1.0 MPPTPPPSKKYSKFPSTTTISLHHIFMASLLTLLLVSFLLFLSFPSSSSSLSQPRSLRIFRSPKPKPKSKPPVTRSSSAAPIPAQILQACKATRFPDVCQ SSLAANSPSKTQQTPIDLIQSAISLSSANLSAAQSMVKSILDSSSGNINRTTAANNCIEALANSKYRTDSAAAVEALRRFGGGGIKDARAWLSASLLYQY DCWNALKYANDTSETAQTMSFIDALQTLTSNALSLIVSYDIHGNETGSWAPPKTERDGFWEESSVGSENHPGPGFPPGLNTDATVCKEGCDYKTVQAAVD AAPNNLPSGKKFVIKIKEGVYKEIVRVPLEKRNLVFLGDGIGKTVITGSLAVGQPGISTYNTATVGKPSSPLNFSRTILFVNGPKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	1.0	0.9665
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	2.4	0.8698
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	4.5	0.8746
AT1G65900			unknown protein		Lus10020799 [exp]	4.9	0.8655
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	5.3	0.8287
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	6.0	0.8307
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	7.1	0.8471
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	8.1	0.7926
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	19.5	0.7715
AT4G39900			unknown protein		Lus10041703 [exp]	19.8	0.7887

Compare expression of checked genes

Lus10013720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.