Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 275 / 4e-90 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 238 / 2e-75 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 153 / 2e-43 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 152 / 3e-43 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 149 / 4e-42 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 150 / 7e-42 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 147 / 2e-41 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 146 / 5e-41 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 145 / 2e-40 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G59010 144 / 2e-40 PME61, PME35 pectin methylesterase 61 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005587 [exp] 340 / 6e-115 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033486 [exp] 241 / 5e-77 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 194 / 4e-58 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10010309 [exp] 157 / 2e-45 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 155 / 1e-44 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 150 / 9e-43 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028536 [exp] 140 / 3e-41 AT3G60730 322 / 6e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 142 / 2e-39 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 138 / 2e-38 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061500 [exp] 288 / 5e-95 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.007G107300 [exp] 288 / 6e-95 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 154 / 4e-44 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 150 / 1e-42 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 150 / 2e-42 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 148 / 1e-41 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 148 / 1e-41 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.012G126800 [exp] 146 / 5e-41 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 145 / 9e-41 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 144 / 1e-40 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10013721 pacid=23169100 polypeptide=Lus10013721 locus=Lus10013721.g ID=Lus10013721.BGIv1.0 annot-version=v1.0 ATGTTCTCATTCATTGATCAAGCTCAAGTTTATACAATCGACGAGAAGGAAAATGACAAGACAAGGAGAATCAAAATCTCTGCAAACATTGCAGGTCTGG AAATGTTTGCAGGTCTGGAAATGTTGTTACTGAATTCTCAGGAGCTGGATTGCCAGCTGCGAGGCAATGTGGACTTCATATTCGGCAACTCGGCCGCCAT CTTCGACGACTGCACAATCTTGGTGGCTCCGAGGCAAGTGATGCCGGATAAAGGCGAGAACAACGCGGTGACTGCTCAGGGCAGGACGGATCCTGCTCAG TCGACAGGGTTCGTGTTCCACAACTGCTTGATTAATGGCACCGAGGAGTACATGAGGCTGTACCGTAGTAACCCCAAGGTGCACAAGAACTTCCTGGGAC GACCCTGGAAGGAGTATTCCAGGACTGTTTTCATTCGTTGCAACATGGAAGCACTGGTGAGCGCTCCAGGATGGATGCCGTGGAGTGGAGATTTTGCGTT GGCGACTCTGTATTACGGGGAGTTTGAGAATTCCGGTGATGGTGGGTCGGATTGGTCGCAGAGGGTGAGTTGGAGTAGTCAAGTACCCAAGGAGCATGTG GATGCTTACTCAGTAGATAATTTCATTCAAGGGAATCAGTGGATTCCCACCATTTGA
AA sequence Show only first row Show all	>Lus10013721 pacid=23169100 polypeptide=Lus10013721 locus=Lus10013721.g ID=Lus10013721.BGIv1.0 annot-version=v1.0 MFSFIDQAQVYTIDEKENDKTRRIKISANIAGLEMFAGLEMLLLNSQELDCQLRGNVDFIFGNSAAIFDDCTILVAPRQVMPDKGENNAVTAQGRTDPAQ STGFVFHNCLINGTEEYMRLYRSNPKVHKNFLGRPWKEYSRTVFIRCNMEALVSAPGWMPWSGDFALATLYYGEFENSGDGGSDWSQRVSWSSQVPKEHV DAYSVDNFIQGNQWIPTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	0	1
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	2.0	0.8300
AT5G57770			Plant protein of unknown funct...		Lus10019972 [exp]	2.4	0.7959
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	2.4	0.8412
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	3.2	0.7774
AT5G55830			Concanavalin A-like lectin pro...		Lus10022521 [exp]	5.7	0.7383
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	6.6	0.7940
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	7.4	0.7928
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	8.1	0.7926
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	8.8	0.7872
AT1G10640			Pectin lyase-like superfamily ...		Lus10013025 [exp]	12.7	0.6407

Compare expression of checked genes

Lus10013721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.