Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005588 [exp] 226 / 4e-65 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 97 / 4e-21 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029952 [exp] 42 / 0.0007 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013722 pacid=23169047 polypeptide=Lus10013722 locus=Lus10013722.g ID=Lus10013722.BGIv1.0 annot-version=v1.0 ATGCTGTTGCAACCAGCATTCTGTCCAGAAGGTCTCCGGACTTCCATCTCATCTCTTGATTTCAACGATGAAAGTTTCTGCTTCCGGCGTGCCGAATGGG CTTCTTCTTCCTTCCCAATGTTCGTTGACACAACATTGATGAATCGCAAGAATCTCTCTGGTCTTACAAGCTTCCGCATCTGTTGTCAATCCTCAGATTC TTCCCAACTTCACCGGTGGATTCGATCCGTTTCCGGGCCTCACCTGGAGGAATTCGTCATCTGGATCAACCCCAGAAGCCACATTCTCCAGCTCAATCTT TCCGACATCCGACGCTGTAAAAGGCTACGAGTCCTGAAGCTCCAGAACTGCATTCTTCTCAGAACGAATCCTACTCTTCAATGTCTCTCATTTCCCAGTC TGAAGACATTGGAGCTGTCCAATGCAGTGATCTCGCCAGAAATCGAAACACTTCACATCTGCTTAGAGAGAATACATTCAACGATTCAGGTAGGGAGAAA CACCCTTTTCGACTTAAAAGCTCTCCGAGTCCTGAAGCTCGGATCAAATGAATACTCGTGCAATGGTCTTGAAGTTTACACTTCTTGCCTTCCCAGCCTA GTGACACTGGAGCTTTCTCAGGTCCACAGAATGACATTGGACGGTGGAGATCTAATTACCAGGCTTTTATCGAGTTCCCCTGTTCTGGAAACATTGGTGA TAAAGGAATCATATTTCTCGACTTTGCACATCGAGTCATTGTCTCTGAAGCATTTGAAACTGGAAGGCTGCAGTAGTCCAGCTGGGGAAGAAGAATGGAG AATAACAGTGAAAGCACCGAAGCTTGTGGAGATTGAGCTTCAGGATCCAATGGTGGCTGAATATCAATTGACTACTCTGCTTTTCTGTCATCTGCTAGAA TTGCCGTCGGGGATCGTTTCACTGACCGGAAATTGGTTCCCCGGCTGGTTCGGCTTCTGGACCAGATTTCCAATGCCAAGCAGAGCCACGATGTCCCCAC TCGAGTGCCACTGGAAGATATCGTCTCCATGGTCGTCATCGACCGAAGCTGGGAGGTGGTATCACAATGCTTCGACCCGTGGATACCCACAGTTCAAGTC CGATCATCTGGTAATTCTTTACAGGGGGTGGGAACACGAGTGGTGGATGTTTGATATGAGAAATGTGGGCCGTGATATCAGATTTGGGTTTCAGTTCACG TTTGGTTGGAAGGTGAAGAAAGTAGGGTTCATGGTTCTAGACTTCAGTTATGATGTCAGTTACGACGAGATGGATTGGACTGCAGGTGAAGCTTTCCGAC TGTTCAACTAG
AA sequence Show only first row Show all	>Lus10013722 pacid=23169047 polypeptide=Lus10013722 locus=Lus10013722.g ID=Lus10013722.BGIv1.0 annot-version=v1.0 MLLQPAFCPEGLRTSISSLDFNDESFCFRRAEWASSSFPMFVDTTLMNRKNLSGLTSFRICCQSSDSSQLHRWIRSVSGPHLEEFVIWINPRSHILQLNL SDIRRCKRLRVLKLQNCILLRTNPTLQCLSFPSLKTLELSNAVISPEIETLHICLERIHSTIQVGRNTLFDLKALRVLKLGSNEYSCNGLEVYTSCLPSL VTLELSQVHRMTLDGGDLITRLLSSSPVLETLVIKESYFSTLHIESLSLKHLKLEGCSSPAGEEEWRITVKAPKLVEIELQDPMVAEYQLTTLLFCHLLE LPSGIVSLTGNWFPGWFGFWTRFPMPSRATMSPLECHWKISSPWSSSTEAGRWYHNASTRGYPQFKSDHLVILYRGWEHEWWMFDMRNVGRDIRFGFQFT FGWKVKKVGFMVLDFSYDVSYDEMDWTAGEAFRLFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013722 [exp]	0	1
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	17.1	0.8147
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	18.7	0.7906
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	20.6	0.7986
					Lus10012621 [exp]	22.7	0.6768
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	24.0	0.8128
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	29.1	0.8092
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	31.9	0.7590
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	37.8	0.7100
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	41.8	0.6847
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	52.2	0.7091

Compare expression of checked genes

Lus10013722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.