Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16650 604 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005589 [exp] 282 / 3e-90 AT1G16650 143 / 3e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065300 [exp] 644 / 0 AT1G16650 546 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013723 pacid=23169051 polypeptide=Lus10013723 locus=Lus10013723.g ID=Lus10013723.BGIv1.0 annot-version=v1.0 ATGGACGACGGGAACAAAACGCCGGCTGGGCAGTGCAAGTACAGTTGCAGCAATGCCGGCGAGACCCTAGAGTGGATCAATGCAATAATCGGTTTCATTC AACCGTTAAACTTCTTGATAACGGCGCAAGTAGTCAATTTCTTCACGGACAGACTCTGGGAAGCTCTGGATAAGGAATGGATTGACTGCCTGCGGAACGA ACCTGTTGAGCATCTGCTTCTCATCCCTTCCGGTGCTGTTCAGGATCATTGGCCAGCTTCGCTCAAGCAATTCATTCTCACGGCCAGGTCGCTCGCGTTT CCCAGTGAGCAAGTGAACCTCCAAAAGGTTTTCCCCAAGCTCAACATAACATCGCTTAGTAGTGTTCTTTCCCAGGGCATGAATAAGAAGAAGAGACATG AAATTGAAGTTCTTTCTGCTATTGTGAGTTCAACGGCAAATGAAGTGGGTGCAGAAATTGTTGTTGATGTTGGTGCTGGGCAGGGTTACCTGGCCCAAGT TGTTTCCTTTCAGTACCAGCATCCTGTAGTTGCAATTGATGCCTGTTCTCATCATGGAAAAGTCACAGAGACAAGAGCTGAACGAATAAGAAAGCATTAT GTTGCTCAAATGCGCAAATTGGGTTCAGGAAACGGGACTATCAAAACACCCAGGACGATAACGTGCCGGGTACTATCTACGGATATGCTAAAAGCCTTAG CTGATGTAGTAACACCAGCTGATGATGGTAAAGAGTCCCAGTTAATCAGTGAAAATAGAAACGAGAAGGCTTCATTGGTACTTGCTGGGTTACACGCTTG TGGTGATCTTTCAGTAACAATGCTTAAGACTTTTTCTGAATGCAAAGAAGCCAAAGCTATTGTTAGCATCGGTTGCTGTTACAACTTGTTATCCGAAGTT TGTTTAGACTCTCCTGCTTCTCAGACCGGTTTTCCAGTGAGCAATGGTGTTAGATCCACTGGCATATCTCTTGGGAGAAGTTCTCGCGATCTTGCTTGTC AGAGTGCAGAGAGATGGAGCTGTCTTGAGAAAGATGCCGGTCTTCAGAATTTTGATTTGCATGCTTTCCGTGCTGTATTCCAGATGCTTTTGTTCCTTGT TGAGGTTCTCTTTAAACACTATCCCGGAAGCATGACTGCGAGCCCCTCAGTTGGTCGTCAAGGGAAAGCTCTGCGTCGCCGGCAGCGGAAGGGGTCTCCC CGGTCCTTCGAAAATTCTAAAGAGAATAAACATTTGTTGGAAACTTCAAACGGGCCTGGCACCAATCATGCAACACAGCCTCTAGATTCTAGAATGGATG ACAATTCTAGCTCGGAGATGGAAAGAAGTTCTACATCTGAAGGTTCATCTTGCGAACGGGCTAAAAAAGTGCTTTCTGCATCTACGGACAAGTGTACTCT CTTTGAGAAATTCAGCTTGTCAGGACTCTCTCGCCTTGGCCTCGAACCCTTGGAGGAGATCGATTTTCATGAAATCTGGAGTGAAGCTCAGCCTTCCGCA GAGCTTATAGGGCCATACTGGTCTCTTCGAGCCGCACTGGGACCTGTTTTGGAGACATTAATTCTGCTAGACAGATTACTGTTTATCCAGGAGCAAGACG GCATAGAAGATGCAGCTATGTTACCTATTTTTGATCCTGCAATATCCCCCAGGAATGTGGCGATAATAGCTCGAAGAAGTTGA
AA sequence Show only first row Show all	>Lus10013723 pacid=23169051 polypeptide=Lus10013723 locus=Lus10013723.g ID=Lus10013723.BGIv1.0 annot-version=v1.0 MDDGNKTPAGQCKYSCSNAGETLEWINAIIGFIQPLNFLITAQVVNFFTDRLWEALDKEWIDCLRNEPVEHLLLIPSGAVQDHWPASLKQFILTARSLAF PSEQVNLQKVFPKLNITSLSSVLSQGMNKKKRHEIEVLSAIVSSTANEVGAEIVVDVGAGQGYLAQVVSFQYQHPVVAIDACSHHGKVTETRAERIRKHY VAQMRKLGSGNGTIKTPRTITCRVLSTDMLKALADVVTPADDGKESQLISENRNEKASLVLAGLHACGDLSVTMLKTFSECKEAKAIVSIGCCYNLLSEV CLDSPASQTGFPVSNGVRSTGISLGRSSRDLACQSAERWSCLEKDAGLQNFDLHAFRAVFQMLLFLVEVLFKHYPGSMTASPSVGRQGKALRRRQRKGSP RSFENSKENKHLLETSNGPGTNHATQPLDSRMDDNSSSEMERSSTSEGSSCERAKKVLSASTDKCTLFEKFSLSGLSRLGLEPLEEIDFHEIWSEAQPSA ELIGPYWSLRAALGPVLETLILLDRLLFIQEQDGIEDAAMLPIFDPAISPRNVAIIARRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	0	1
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	2.0	0.8827
AT3G27930			unknown protein		Lus10008782 [exp]	3.2	0.8690
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	4.2	0.8833
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	5.4	0.8977
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	5.7	0.8684
AT3G09310			unknown protein		Lus10003975 [exp]	6.0	0.8418
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10013115 [exp]	6.4	0.8384
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	6.5	0.8647
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	9.3	0.8855
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	9.8	0.8724

Compare expression of checked genes

Lus10013723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.