Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14400 620 / 0 UBP25 ubiquitin-specific protease 25 (.1) AT5G65450 209 / 1e-58 UBP17 ubiquitin-specific protease 17 (.1) AT5G57990 210 / 4e-58 UBP23 ubiquitin-specific protease 23 (.1) AT4G24560 206 / 3e-56 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 202 / 3e-55 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 191 / 2e-53 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 191 / 1e-52 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 145 / 3e-36 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 132 / 5e-32 UBP20 ubiquitin-specific protease 20 (.1) AT4G39910 106 / 8e-25 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005591 [exp] 1225 / 0 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10009273 [exp] 217 / 6e-60 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10020116 [exp] 209 / 1e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 207 / 5e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10035825 [exp] 184 / 5e-49 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 184 / 8e-49 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10032623 [exp] 178 / 1e-46 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 175 / 1e-46 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 176 / 2e-46 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112800 [exp] 727 / 0 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 712 / 0 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.005G156900 [exp] 228 / 1e-63 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 219 / 1e-60 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G009500 [exp] 213 / 9e-60 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G107500 [exp] 212 / 1e-58 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 209 / 2e-57 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G270600 [exp] 199 / 1e-55 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G378900 [exp] 201 / 8e-55 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G095200 [exp] 200 / 8e-55 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10013726 pacid=23169124 polypeptide=Lus10013726 locus=Lus10013726.g ID=Lus10013726.BGIv1.0 annot-version=v1.0 ATGGGCTGCCTCCAATTGCAGATGAGTTGGCAGCCGAGTTTGTTGAACCAGCAACGGAAGAATAGGCCGCCATTAGGGTTGAAGAATCTAGGTAACTCTT GCTACCTCAACAGTGTGCTTCAGTGCCTCACTTACACGCCTCCTCTCGCTAATTTCTGTCTCCGCTTACAGCACTCTTCCATCTGCGATTCAGTTTCCAA TGGGGAGCGTAAGCGGGAATGTCCCTTTTGTATTATTGAGAGGAGGATAGTCCGGTCCCTAAGCTTGGAGGCCACCGTTGATACCCCTCTCAAGATAAAT AACTTCCTGCGGATTTTTGCTGAGCATTTTAGACGCGGCCGACAAGAAGATGCCCACGAGTTCTTGCGGTATGTAATTGATGCATGCCACAACACTTGTT TGCGTCTCAAGAAACTGCGACGAAAAGGCATTGGCCCTGCCAGCAACAGTACTGTAGTCAGTGATATATTCGGGGGTGCTCTGCAGAGCCAAGTGAAGTG TTTATCTTGTAATGCGGAGTCAAATAAGGTTGATGAGATTATGGACATTAGTCTAGAGATTTTGCATAGTAGTTCACTTTTGGAGGCGATGCACAAGTTT TTCCAGCAAGAGATTTTGGATGGAAATAATAAGTATCAATGCGAAAGTTGTAAGAAATTAGTGGCAGCAAGGAAGCAAATGTCAATTGTTGAAGCACCAG ATGTCCTTGTCATCCAACTTAAGAGATTTGAGGGCATATTTGGCGGGAAGGTTGACAAGACCGTAGCATTTGGAGAAGTTTTGGTACTATCCAGCTTCAT GTGCAAATCAAGCCAGGACCCCCAGCCAGAGTATAGCCTCTTTGGTACCATAGTGCATTCAGGATACTCTCCTGAATCTGGACACTACTACGCTTATATC AAGGATGCAATGGGACGTTGGTACTGCTGCAATGACTCGTATGTTACCTTGTCAACCTTACAGGAGGTCTTGTCAGAGAAAGTGTATATTCTTTTCTTTT CTCGAACTAATCAAAAGCCAGTATCTACGAAGCCTGCTGTAAAGCCTGCTGTTGCTTCAAATGGAGCCCAGTCACTTGACCTGAACGGAAGCAAGGCCTC TAAAATTACTAAGGCTACCCTCCCTCCGAAATTAGGGTATCCAAGGCCACTTGCTTCGGGGAAGGATATTGTGGCTAGCTCTGACGTTGATAAAATTACT TCTAGGATACAAATAAAGTTCAATCTTTCTGGAAACTCTGTTTCTAAGATGCTTCCTCCAATTACCAATGGGAGGGCTGTTGTGGCTAAAGCGAACTCAG AAGCTAATGGTACCTCAGAAGGCAAGGTTCAGTCTGAGACGCTTGGCGAAACATCAATGTCATCAGTAATCAAGCATGGGTCCAGTAGTAGCACAAAAGT TAATGTTGCCAATGTTGAGACTCACCATGCTCATACAGCTGCAGATGAAAATCAACACTCCGAAAATGGCGTCGTTACTCCTGTGAGGCCAACTTTGTAC AAGGGGAATAATGGCTCGCTAAGCAATGGAATAGCAAGGACGGCTCCTATTTGCAATGAAATGTCAAATGGTGCTTCCCACTCCCGACAGCTTGTTTCTC GGTCCAAGAGAAAATTGAAGCAGAGTTCCTGTGTTTTGTTTGCTCTAGATGATCAATCAAGAGCCAAGGTTGATGAGCTGAAGGAACTTCTCGAGCAAGA ATCATCTGCATTCTTGCGGTCATCTGGCTGGACTGGTGAAGTATACAATCGCATGTCAAAGAAAAGATTACGTGAACAAGAAGCAGGAAGCACCAATAGC GCTGATGAGTTGAAGGGCTTGTTGATTGCGGATGCTAAGCGAATGTTCAAGTCAAAGGTGCCTGGATCATTAATAGGAGATCTAGTGAAGCAAATTCAGT CATTTAGTGAAGGGAAATGA
AA sequence Show only first row Show all	>Lus10013726 pacid=23169124 polypeptide=Lus10013726 locus=Lus10013726.g ID=Lus10013726.BGIv1.0 annot-version=v1.0 MGCLQLQMSWQPSLLNQQRKNRPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSICDSVSNGERKRECPFCIIERRIVRSLSLEATVDTPLKIN NFLRIFAEHFRRGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGIGPASNSTVVSDIFGGALQSQVKCLSCNAESNKVDEIMDISLEILHSSSLLEAMHKF FQQEILDGNNKYQCESCKKLVAARKQMSIVEAPDVLVIQLKRFEGIFGGKVDKTVAFGEVLVLSSFMCKSSQDPQPEYSLFGTIVHSGYSPESGHYYAYI KDAMGRWYCCNDSYVTLSTLQEVLSEKVYILFFSRTNQKPVSTKPAVKPAVASNGAQSLDLNGSKASKITKATLPPKLGYPRPLASGKDIVASSDVDKIT SRIQIKFNLSGNSVSKMLPPITNGRAVVAKANSEANGTSEGKVQSETLGETSMSSVIKHGSSSSTKVNVANVETHHAHTAADENQHSENGVVTPVRPTLY KGNNGSLSNGIARTAPICNEMSNGASHSRQLVSRSKRKLKQSSCVLFALDDQSRAKVDELKELLEQESSAFLRSSGWTGEVYNRMSKKRLREQEAGSTNS ADELKGLLIADAKRMFKSKVPGSLIGDLVKQIQSFSEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10013726 [exp]	0	1
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	1.0	0.8113
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	6.2	0.7889
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	11.0	0.7367
AT5G13610			Protein of unknown function (D...		Lus10030300 [exp]	35.0	0.7454
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	44.9	0.7378
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	78.1	0.6871
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	92.6	0.7403
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	93.7	0.7265
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	98.1	0.7289
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	105.4	0.7378

Compare expression of checked genes

Lus10013726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.