Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53670 248 / 5e-84 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2) AT4G04830 114 / 3e-32 ATMSRB5 methionine sulfoxide reductase B5 (.1.2) AT4G21830 110 / 1e-30 ATMSRB7 methionine sulfoxide reductase B7 (.1.2) AT4G21840 110 / 1e-30 ATMSRB8 methionine sulfoxide reductase B8 (.1) AT4G04800 110 / 3e-30 ATMSRB3 methionine sulfoxide reductase B3 (.1) AT4G04840 108 / 9e-30 ATMSRB6 methionine sulfoxide reductase B6 (.1) AT4G21860 109 / 1e-29 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3) AT4G04810 107 / 1e-29 ATMSRB4 methionine sulfoxide reductase B4 (.1) AT4G21850 106 / 4e-29 ATMSRB9 methionine sulfoxide reductase B9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005593 [exp] 330 / 2e-116 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2) Lus10009574 [exp] 109 / 1e-30 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2) Lus10020486 [exp] 109 / 1e-29 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Lus10007105 [exp] 107 / 1e-28 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114300 [exp] 231 / 2e-77 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2) Potri.009G080700 [exp] 111 / 3e-30 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.008G198600 [exp] 108 / 5e-30 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2) Potri.001G286500 [exp] 107 / 1e-28 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF01641 [flax] [poplar] SelR SelR domain
Representative CDS sequence Show only first row Show all	>Lus10013727 pacid=23169123 polypeptide=Lus10013727 locus=Lus10013727.g ID=Lus10013727.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTCTGTGTCATAGCACGACGAGGATTCAGTGCTTATCAGAAGCAGCAACTGCAAGTCTACTCTCCTCCACAACCCAACAATTCAATTTTG GATCAGTGCTGTTACTGAAGGAAGGCAGTACTCGCCGCCGACGACTCACCGGAAGATCAGTTTCTTTGTCCGTCCGCGCCATGGGTTCTTCTGCCTCCTC TCCCAAACCTAATGAAAACCTTCAAGATACGAAGAAAGGCATGCCCTTGACCTTGAGTGATGAAGAATTGAAGAAGAAACTCACACCAGAACAGTACTAT GTAACTCGGCAGAAGGGAACCGAGAGAGCTTTCACTGGGGACTACTGGAGAACCAAAACCCCAGGAACTTACCACTGCATATGTTGCGACACGCCACTTT TCGAATCAGCAACGAAGTTTGACAGTGGAACCGGGTGGCCATCTTATTACGAGCCGATAGGGGACAACGTGAAATCGAAGCTGGATTTGTCCATCATCTT CATGCCTAGGACGGAGGTTGTGTGTGCTGTTTGTGATGCTCATCTAGGACATGTGTTCAACGATGGTCCGCAGCCTACTGGCCAACGCTACTGCATCAAC AGTGCTGCGCTGAAGCTAAACCCCATGGAGAAGTAA
AA sequence Show only first row Show all	>Lus10013727 pacid=23169123 polypeptide=Lus10013727 locus=Lus10013727.g ID=Lus10013727.BGIv1.0 annot-version=v1.0 MAATLCHSTTRIQCLSEAATASLLSSTTQQFNFGSVLLLKEGSTRRRRLTGRSVSLSVRAMGSSASSPKPNENLQDTKKGMPLTLSDEELKKKLTPEQYY VTRQKGTERAFTGDYWRTKTPGTYHCICCDTPLFESATKFDSGTGWPSYYEPIGDNVKSKLDLSIIFMPRTEVVCAVCDAHLGHVFNDGPQPTGQRYCIN SAALKLNPMEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	2.0	0.9496
AT5G57345			unknown protein		Lus10001632 [exp]	2.0	0.9525
AT5G55570			unknown protein		Lus10008950 [exp]	2.4	0.9436
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	3.5	0.9363
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10017089 [exp]	3.7	0.9182
AT2G46735			unknown protein		Lus10002690 [exp]	4.5	0.9358
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	5.1	0.9201
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	6.5	0.9328
AT2G35490			Plastid-lipid associated prote...		Lus10035384 [exp]	8.7	0.9167
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	8.8	0.9330

Compare expression of checked genes

Lus10013727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.