Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 56 / 1e-09 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005595 [exp] 214 / 7e-71 AT3G04720 65 / 8e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005594 [exp] 199 / 6e-65 AT3G04720 69 / 3e-14 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10039212 [exp] 198 / 2e-63 AT3G04720 42 / 2e-04 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005596 [exp] 152 / 3e-46 AT3G04720 66 / 6e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10015270 [exp] 84 / 3e-20 AT3G04720 46 / 3e-06 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10026915 [exp] 59 / 2e-10 AT3G04720 66 / 5e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10042694 [exp] 56 / 1e-09 AT3G04720 57 / 7e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020113 [exp] 55 / 4e-09 AT3G04720 52 / 6e-08 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 47 / 1e-06 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 59 / 6e-11 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 57 / 5e-10 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 52 / 2e-08 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 52 / 3e-08 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10013728 pacid=23169053 polypeptide=Lus10013728 locus=Lus10013728.g ID=Lus10013728.BGIv1.0 annot-version=v1.0 ATGGTGAAAATAATCTCTGCTTTCTGGATAGTACTAGTTGTGGTTCTGACAGCATCAACATCAGCAACCAGCACCGAGCTTCCGGATGCTAGGTGTTACG ATATCCCTAACTACCGCCGTTTTGAATGCGATCCGGGCCGCTGCTGTAGTATCTGGCATTACTGCGGTGACACCGCTGACTACTGTGTTGGACCTGGCTG TGCATTCCAGTGCACTGACCCTGGAGATCATGTAACATCATCCATTCGTAATGTTACTAGTGGTACACAACTCGTCAAGGTTACACGTTACGATGATCGA AATTCGTTATCGTGTGCAAATTCTCTCACTGATTTGTCGTCGGCGTGCCTTCACAAGTATCCATGGGCTTCTTTCCGCGTCAACAACATTACTAGTACAT GCGGCGGCTGCTTAAAATTGACGAATGTTAGGAGCGGAGTTGAAGCGATGGTACGAGTTGTCCATGAACCTGCTACTGAATCTGATCAGCTGGCACTCGA ACTGGGCGCTGCTACGTTCAACAAACTCAACGGCCGTGGTGAAGGTGATCATCATCACGACCTTGTCGTCAAGTACAGCTTTGAAAGCTGCGATTGA
AA sequence Show only first row Show all	>Lus10013728 pacid=23169053 polypeptide=Lus10013728 locus=Lus10013728.g ID=Lus10013728.BGIv1.0 annot-version=v1.0 MVKIISAFWIVLVVVLTASTSATSTELPDARCYDIPNYRRFECDPGRCCSIWHYCGDTADYCVGPGCAFQCTDPGDHVTSSIRNVTSGTQLVKVTRYDDR NSLSCANSLTDLSSACLHKYPWASFRVNNITSTCGGCLKLTNVRSGVEAMVRVVHEPATESDQLALELGAATFNKLNGRGEGDHHHDLVVKYSFESCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	0	1
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	1.0	1.0000
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	2.0	1.0000
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	2.4	1.0000
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	3.0	0.9406
					Lus10026928 [exp]	3.5	1.0000
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	3.6	0.9221
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	3.7	0.9699
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	3.9	0.9881
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	4.2	0.9854
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	5.4	0.8270

Compare expression of checked genes

Lus10013728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.