Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56000 471 / 1e-166 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G55980 403 / 6e-139 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G04650 114 / 7e-28 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039206 [exp] 624 / 0 AT1G56000 526 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10022002 [exp] 110 / 2e-26 AT3G04650 588 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10042542 [exp] 109 / 3e-26 AT3G04650 585 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438500 [exp] 492 / 5e-175 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G055800 [exp] 115 / 2e-28 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10013734 pacid=23169128 polypeptide=Lus10013734 locus=Lus10013734.g ID=Lus10013734.BGIv1.0 annot-version=v1.0 ATGGTGAAAATACCGACGGTGACAGTATCAGGAGCAGTATGTGCATCCACTCTGGCCAAACATGGCATCTCGGTTACCCTTTTCGACTCCGCAAGAGGCC CCGGTGGCCGCATGGAAATTTGTGAAGATGGGAAGGAGCTGTTATTTGACCATGGAGCTCCCTTCTTCTGTGCAACTAACAATGATGTGTTGAACCTTGT TCATGAATGGGAATCAAAAGGCCTTGTGGCTGAGTGGAAGCACAGCTTTGGGGATTTTGATTTTGGCTCCAAAGGGTTCCTTAACATTGAAAAGGAATAC ACGGCCAAGAGATATGTTAGTGTGCCAGGCATGAACTCTATATGTAGAGCTTTGAGCAATGAAACTGGTGTGGAGAGTAAGTTTGGTGTTGGAGTTGGAA AGATAGAATGGTTAGACGACGAGAAATCGTGGTCACTGACCAGCTCTGGTGGCCAAGCACTTGGTCATTTTAAGGGAGTGGTAGCATCTGACAAAAACAT TGCTTCATCAAGATATACTGAGGTGACTGGATTTCCGCCACCCCTTGATCTAAATTTTTCTCCTGAGTTGGCAGTCAAGTTACTGGACATTCCTGTCAAT CCATGTTTTTCAGTGATGCTGGCTTTCACAGAGCCTTTGTCATCAATACCTGTAAAGGGCATAGCTTTCAGAAACTCGGACGTCTTGAGTTGGGGTTACT GTGACAGCAGCAAACCCTCACGTCCAACCACAAGCGAAAGATGGGTGCTTTATTCGACTGCCAAGTACGCAAGGAACGTAATTTCTGAGACAGGACTCAA GAAGCTTTCAAGTGAAGCATTGAACAAAGTTGCAGAAGAAGTGCTGTCGGAATTTCAAAGCACCGGACTTTGTATCCCTCGCCCTTTCTTCAAGAGAGCT CATCGTTGGGGAAGTGCTTTCCCGGCTGCAAGCGTAGCTGGAGAAGAGAAATGCTTGTGGAGTGGGGAGAGGAAAGTGGCGATTTGCGGAGACTTTTGTG TCAGTCCAAATGTGGAAGGTGCAATACTCAGTGGGGTTGCTGCTGCTTCAAAGCTTTCAGCTTCACTTCTCAGCTGTTCTTCAAAGTGCTAA
AA sequence Show only first row Show all	>Lus10013734 pacid=23169128 polypeptide=Lus10013734 locus=Lus10013734.g ID=Lus10013734.BGIv1.0 annot-version=v1.0 MVKIPTVTVSGAVCASTLAKHGISVTLFDSARGPGGRMEICEDGKELLFDHGAPFFCATNNDVLNLVHEWESKGLVAEWKHSFGDFDFGSKGFLNIEKEY TAKRYVSVPGMNSICRALSNETGVESKFGVGVGKIEWLDDEKSWSLTSSGGQALGHFKGVVASDKNIASSRYTEVTGFPPPLDLNFSPELAVKLLDIPVN PCFSVMLAFTEPLSSIPVKGIAFRNSDVLSWGYCDSSKPSRPTTSERWVLYSTAKYARNVISETGLKKLSSEALNKVAEEVLSEFQSTGLCIPRPFFKRA HRWGSAFPAASVAGEEKCLWSGERKVAICGDFCVSPNVEGAILSGVAAASKLSASLLSCSSKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10011656 [exp]	1.4	0.8611
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	2.2	0.8845
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	6.0	0.8407
AT4G01995			unknown protein		Lus10012004 [exp]	8.0	0.8221
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	13.8	0.8319
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10032672 [exp]	14.0	0.8071
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	17.7	0.8530
AT4G37020			unknown protein		Lus10000435 [exp]	18.0	0.8205
					Lus10020450 [exp]	19.0	0.7306
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	25.9	0.8101

Compare expression of checked genes

Lus10013734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.