Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51130 323 / 2e-107 Nse4, component of Smc5/6 DNA repair complex (.1) AT3G20760 295 / 3e-97 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039205 [exp] 671 / 0 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10042459 [exp] 391 / 3e-134 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10021041 [exp] 110 / 5e-28 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10004185 [exp] 92 / 1e-21 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T028032 [exp] 374 / 1e-127 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.003G212600 [exp] 372 / 4e-127 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.016G046802 [exp] 321 / 5e-107 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [flax] [poplar] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Lus10013735 pacid=23169046 polypeptide=Lus10013735 locus=Lus10013735.g ID=Lus10013735.BGIv1.0 annot-version=v1.0 ATGCGAACTTGCAAGCGGGAACGCACTAGCGCCGCCGCCGCTCATGGAGAAGGAGGAGGTGAAGAGCGGGTTCTTAGGAATACTAAGCAGGAGCGAGTCC GAGCTAACTTGCGTGCGGCCCGGGAGGAAGGCGAGGAGCCTGAGCAAGGCGTTGAGGAAAGGAGAATCCTTCGATTTAAGTATCGCGCCTTACAAACTAG GATCAACGAGGAGAGGGATGATCTGACGAATGTCGATTCCGATAAGTTCGGCTCGTTTATGAAGGAGGTTGATGATTTGCACCAATACGTTCAGAAGCCA AGGGAGCAGGTTGCTGATGCAGAGGCATTGTTGGGGCTAACTTCCTCATTAGTTTCCTCTGTTAAGTCACAATCTGCTGACGGTGTTACAGTTGGAGGAC TTATCGCTCAATTGAAGAATGCCTTTGGGCAACCTGCAACTGGTTTAGATGATCAGGAAAATGTCCCGATTTCAGTCAATTGGAAGGAGATTGGGCTCTT TGTTTCGCCTATATTTAAGAACTTCAGAGGGTTTACCACCATGTTGGGGCCAATGGATACTGAGATCAAACTAAGGAAGCACAATGTAACTCAGAGGACC CGAACGAAGCCTGGTCAGAGTACACGTCCAGAAGAAGTTAATAATGCTGGAGCTGAAGAGAGAACTGATACTGATAAAAACATGGCAACCATGTTTGGGG TCTTGAGGAGCAAGAAACGTGTAAGGCTCGAAAGTTTGATCTTGAATAGGAGATCTTTTGCCCAGACTGTGGAGAACCTGTTTGCACTTTCTTTCTTAGT GAAAGATGGCCGGGTTGAAATTGTTGTGGACGACAATAACACTCATTTTGTCTTGCCAAGGAATGCCCCAGCTGCTGATTCTGTTGTCTCAAAGGAGGTT GCATATAGACACTTTGTATTCAGATTTGACTTCCAAGACTGGAAGTCTATGCTCAATGGGGTACCTGATGGCGAAGAACTGATGCCAGACCGAGATACCA AAACTCCTGCTGCAATGGACACTGGTGCTGCCAGCACTCAACGTGCACAACCACGAGCTGCAATGGACCCTGGTCCTTCCAACTATCAAGGTGCACAACC ACGAACACCGATACGTAAACTGACAAGGAACCGTGGGTTCGTTGTACAGAATGAAACAGTCGAGGAGACTCCTGAAGAAGATGATGATGACGGTCTTCTT AGGAGAACTGGCGTCAATCGATGCAAGCGTAGGCTTGTTTAA
AA sequence Show only first row Show all	>Lus10013735 pacid=23169046 polypeptide=Lus10013735 locus=Lus10013735.g ID=Lus10013735.BGIv1.0 annot-version=v1.0 MRTCKRERTSAAAAHGEGGGEERVLRNTKQERVRANLRAAREEGEEPEQGVEERRILRFKYRALQTRINEERDDLTNVDSDKFGSFMKEVDDLHQYVQKP REQVADAEALLGLTSSLVSSVKSQSADGVTVGGLIAQLKNAFGQPATGLDDQENVPISVNWKEIGLFVSPIFKNFRGFTTMLGPMDTEIKLRKHNVTQRT RTKPGQSTRPEEVNNAGAEERTDTDKNMATMFGVLRSKKRVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIVVDDNNTHFVLPRNAPAADSVVSKEV AYRHFVFRFDFQDWKSMLNGVPDGEELMPDRDTKTPAAMDTGAASTQRAQPRAAMDPGPSNYQGAQPRTPIRKLTRNRGFVVQNETVEETPEEDDDDGLL RRTGVNRCKRRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	0	1
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	1.4	0.9272
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	6.3	0.9078
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	8.7	0.9214
AT4G36180			Leucine-rich receptor-like pro...		Lus10004266 [exp]	9.0	0.9154
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10030858 [exp]	20.2	0.8581
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	20.9	0.9065
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	23.8	0.9069
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	25.1	0.8363
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	25.9	0.9059
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	30.6	0.8916

Compare expression of checked genes

Lus10013735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.