Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19640 638 / 0 Major facilitator superfamily protein (.1) AT1G32450 565 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 537 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT3G54140 410 / 2e-136 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 399 / 4e-132 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 391 / 6e-129 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 387 / 1e-127 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 326 / 3e-104 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 320 / 2e-101 Major facilitator superfamily protein (.1) AT5G13400 319 / 2e-100 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039204 [exp] 1063 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030945 [exp] 559 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 554 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 533 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 531 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 428 / 3e-143 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 427 / 4e-143 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 427 / 1e-142 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 419 / 1e-139 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013400 [exp] 750 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 738 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G145200 [exp] 575 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 569 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 549 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.010G100200 [exp] 428 / 3e-143 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 411 / 6e-137 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 400 / 1e-132 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 394 / 3e-130 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 389 / 4e-128 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10013736 pacid=23169066 polypeptide=Lus10013736 locus=Lus10013736.g ID=Lus10013736.BGIv1.0 annot-version=v1.0 ATGGAGCATAACCATGGAAGCACCCAAGCTCACCAGGAGGATCGAATTCAACAAGAAACAAGTCATGTGGTGGTCTCTGCTACCGCAACTTCTGTCGAGA ATGTCGACAACCAAACCTCTCCCATTGTTGCCAGGGGCAGAGGTGGTTGGGTAGCTGCATTCCTATTGCTAGCGAATCAAGCGCTGGCGACGCTGGCGTT CTTCGGAGTAGGGGTAAATCTGGTGCTGTTCTTGGCGAGAGTGATGGGGAGAAGCAATGCGGACGCTGCAAATGATGTCAGCATCTGGACTGGAACTGTC TACCTTTTCTCCCTCTTAGGAGCTTTCCTCAGCGACTCTTACTGGGGCCGCTTCAACACCTGCGGCATCTTCCAGGCCGTGTTCGTTGTGGGTCTGATAC TGGTCACAGTATCATCAGGAGTATACCTGATAAAGCCCAACAACTGCGGAGACGGATTTCTGGACTGCAACCCAGCAACAAACCCGGGCTCCGCTATCTT CACGCTCGCGATCTACTTAGTAGCTCTAGGCTATGGCGGCCACCAGCCGACTCTGGCAACTTTCGGAGCGGACCAGTTCGACGAGTCGAACCCCAGCACG CTAGACGCGAGGGCTGCTTTCTTCTGCTACTTCTACTTCGCCCTCAACTGCGGCTCGCTAATCTCCAACACCGTCATCGTCTACTACGAGGACACCGGAA AATGGACCATCGGCTTCATCGCCTCCCTCGGCGCTGCTGTCCTCGCGCTCGTGCTTTACCTCGTCGGCATGCCTTTCTACCGCTACATCAAGCCCTGCGG CAATCCTTTGCCACGCGTCGCACAAGTCTTCGTCGCCGCCATCAGGAAGCGGAAGGCCCCGTCTGTTAGTCCTGAATTGCTTTACGAGGTTGAAGGGACC GAATCGGCGATCAAAGGCAGCCGGAAGATCAATCACAGCAATGAATTCGAGAGCTTAGACAAAGCAGCAACGATCACAGAAGGCGAGAATCCAGCGGAGA GGCATCCATGGAGGCTATGCACAGTGACACAGGTTGAGGAAGCCAAATGTGTGCTGAAAATGCTGCCAATTTGGCTCTGCACAATCATCTACTCAGTGGT TTTCACTCAAATGGCGTCGTTCTTCGTGGAGCAAGGGGATGTGATGAACACCACCATTGGGAACTTCCGCCTCCCAGCAGCGAGCATGTCAGCATTCGAC ATCTGCTCCGTGCTAATCTGCACGGGAATCTACCGCCAGGTGCTCGTCCCAACAGCCGAGACGCTGAGCGGAAATCCCAAGGGACTAACCGAGTTGCAGA GGATGGGAGTCGGGCTAATCATCGGAATGTTCGCCATGATCGCTGCAGCAATCACCGAGGTGTTCAGGCTGAAGAACGTCAGCCATGGGGAAAAGGTCAG CAAGCTGAGCGTGTTCTGGCAGATCCCACAGTACGCACTTGTCGGTTGTTCTGAAGTTTTCATGTACGTGGGTCAGTTGGAATTCTTCAACGGGCAGGCT CCGGACGGGATCAAGAGCTTCGGAAGCTCGCTCTGCATGGCTTCGATCTCTTTGGGGAACTACGTCAGCAGCTTGCTTGTGAACATGGTGATGATCATAA CTGCAAGAGGGGAGAATCCAGGGTGGATCCCTGAAGATTTGAATGAGGGTCGGATGGATTTGTACTATGGAACGATTGCAGCTTTCACGCTCGTTGATTT CGTAATTTATCTAGGCTGTGCGAAGTGGTACCAACCGATCAGTCTGGATTATGGTCATGGCAAAGAGGCTGAGATTGTGGAAGTGCAGCAGGGAGATGAT CATCAAGCTGGAGCAGATGAACATCAGGTTTTTGGAAGAGCATGA
AA sequence Show only first row Show all	>Lus10013736 pacid=23169066 polypeptide=Lus10013736 locus=Lus10013736.g ID=Lus10013736.BGIv1.0 annot-version=v1.0 MEHNHGSTQAHQEDRIQQETSHVVVSATATSVENVDNQTSPIVARGRGGWVAAFLLLANQALATLAFFGVGVNLVLFLARVMGRSNADAANDVSIWTGTV YLFSLLGAFLSDSYWGRFNTCGIFQAVFVVGLILVTVSSGVYLIKPNNCGDGFLDCNPATNPGSAIFTLAIYLVALGYGGHQPTLATFGADQFDESNPST LDARAAFFCYFYFALNCGSLISNTVIVYYEDTGKWTIGFIASLGAAVLALVLYLVGMPFYRYIKPCGNPLPRVAQVFVAAIRKRKAPSVSPELLYEVEGT ESAIKGSRKINHSNEFESLDKAATITEGENPAERHPWRLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASFFVEQGDVMNTTIGNFRLPAASMSAFD ICSVLICTGIYRQVLVPTAETLSGNPKGLTELQRMGVGLIIGMFAMIAAAITEVFRLKNVSHGEKVSKLSVFWQIPQYALVGCSEVFMYVGQLEFFNGQA PDGIKSFGSSLCMASISLGNYVSSLLVNMVMIITARGENPGWIPEDLNEGRMDLYYGTIAAFTLVDFVIYLGCAKWYQPISLDYGHGKEAEIVEVQQGDD HQAGADEHQVFGRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	0	1
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	12.1	0.6995
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	13.6	0.6757
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	13.6	0.6720
					Lus10024633 [exp]	23.6	0.6634
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	23.7	0.6837
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	27.0	0.6494
					Lus10019938 [exp]	42.7	0.6029
					Lus10003442 [exp]	68.6	0.5639
AT1G61667			Protein of unknown function, D...		Lus10006749 [exp]	72.3	0.5307
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10006125 [exp]	73.9	0.5778

Compare expression of checked genes

Lus10013736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.