Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13670 928 / 0 Protein kinase family protein (.1) AT2G25760 859 / 0 Protein kinase family protein (.1.2) AT3G03940 815 / 0 Protein kinase family protein (.1) AT5G18190 813 / 0 Protein kinase family protein (.1) AT3G03930 258 / 1e-81 protein kinase-related (.1) AT4G28860 185 / 1e-52 CKL4 casein kinase I-like 4 (.1.2) AT1G03930 186 / 5e-52 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28880 184 / 5e-52 CKL3 casein kinase I-like 3 (.1) AT5G44100 186 / 6e-52 CKL7 casein kinase I-like 7 (.1) AT2G19470 184 / 1e-51 CKL5 casein kinase I-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039203 [exp] 1148 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 1041 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 1023 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 855 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 796 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 777 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10014152 [exp] 771 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10011091 [exp] 769 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 767 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 975 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 972 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 874 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 863 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 833 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G189100 [exp] 821 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 810 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 186 / 3e-52 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 186 / 3e-52 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.010G070400 [exp] 185 / 8e-52 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013737 pacid=23169050 polypeptide=Lus10013737 locus=Lus10013737.g ID=Lus10013737.BGIv1.0 annot-version=v1.0 ATGCCTAAGCTCCGCAGAGGTGTAGCAAGAGGTCGCGCAGGGTTAGCGCCTGGAGGCAACAACAAACAATCGGAGCCTCCTGCCGCTGCCAGAGAGGGCA ATCAGAGGCCGAGGACGAGGTTGGAGTCGAAGCGATTGAAGGAGAAGGAAGAGCAGGAGGATAATAGAAGGGAGGTTGTTGTGATATCGGATAGAGAAGA GAGTAAGAGAATAGTAAAAGTCGGTAGTTTGGTTCCTGTTGTTGACCTTGAAGCGGGAGAAAAAGAGGTTAGAGTTGGCGGAATGGCTGACGATAGTGGT GGCTTGAGTGCTAATAATGCCGCCGGGCAGGAAGAAGAAGGGACTGCGACTCCTTTCCCTGAAAGAGTTCAAGTGGGAGGGTCACCAGTGTACAAGATAG AAAGGAAGTTGGGTAAAGGTGGCTTTGGTCAAGTTTTTGTTGGTCGTCGTGTAACCGGTGGAAATGAACGCGGGACAGGGGCTGGTGCTATGGAGGTGGC CGTGAAGTTTGAACACAGAAATAGCAAAGGCTGTAATTATGGTCCTCCTTATGAATGGCAAGTTTACAACACCCTTGGTGGCAGTTATGGGGTGCCCAGA GTGCATTTTAAAGGAAGGCATGGAGATTATTATGTTATGGTTATGGATATGCTTGGCCCAAGCCTGTGGGATGTTTGGAATTCTTCTGGTCAAGCGATGT CTGCGGAAATGGTATCTTGTATAGCTGTGGAGTCCCTTACCATCTTAGACAAAATGCACTCACGTGGATATGTGCACGGGGATGTAAAGCCAGAGAACTT CTTACTTGGTCAGCCAGCTACAGCACAGGAGAAGAAACTTTTTCTTGTGGACCTGGGATTAGCTACAAAGTGGAGAGACGGTAGCAGTGGGGAACATGTC GAATATGACCAACGTCCTGATATGTTTCGGGGTACTGTGCGATATGCCAGCGTTCACGCTCATTTGGGAAGGACAGCTAGTCGGAGAGATGATCTTGAAT CTCTGGCTTACACTCTGATCTTCCTGCATCGAGGCAGGTTGCCCTGGCAAGGCTATCAGGGTGACAATAAGTCCTTTCTAGTTTGCAAAAAGAAAATGGC AACGTCTCCAGAGATGCTGTGCTGCTTCTGTCCCCAACCTCTCAAGCAGTTTCTTGAGATTGTGGTCAATTTGAAATTTGACGAGGAACCAAACTATTCC AAGCTTATATCTCTATTTGAGGGCTTGTTAGGGCCAAATCCAGCAATAAGGCCTATAAACACAGAGGGGGCTCAAAAGATTATCTCTCAAGTTGGTCAGA AACGTGGTCGGTTAAATATGGAGGAGGATGATGGGCAACCAAGAAAGAAGGTTCGGCTTGGAGTTCCTGCTACACAATGGATTTCAATTTATAATGCGAG GCGACCAATGAAACAGAGGTACCACTACAATGTTGCTGATGGAAGGTTGGCACAACATGTGGAGAGAGGAATTGCCGATGGTCTTCTTATAAGTTCTGTG GCGTCCTGTACGAATCTTTGGGCATTGATTATGGATGCCGGAACCGGTTTTAGTAGTCAAGTTTATGAACTGTCTCCCTTTTTCTTGCACAAGGAGTGGA TTATGGAACAATGGGAGAAGAACTACTACATTAGCTCAGTTGCTGGCTCGAATAATGGTAGCTCACTTGTAGTTATGTCCAAAGGCACTCAATACACTCA ACAGTCTTACAAGGTCAGCGATTCGTTCCCTTTCAAATGGATCAACAAGAAGTGGAAGGAAGGATTTCATGTGACCTCAATGGCAACTGCTGGATCCCGC TGGGGTATCGTCATGTCTCGTAATGCCGGGTTCAGTGATCAGGTGAAGTTTCTTTGA
AA sequence Show only first row Show all	>Lus10013737 pacid=23169050 polypeptide=Lus10013737 locus=Lus10013737.g ID=Lus10013737.BGIv1.0 annot-version=v1.0 MPKLRRGVARGRAGLAPGGNNKQSEPPAAAREGNQRPRTRLESKRLKEKEEQEDNRREVVVISDREESKRIVKVGSLVPVVDLEAGEKEVRVGGMADDSG GLSANNAAGQEEEGTATPFPERVQVGGSPVYKIERKLGKGGFGQVFVGRRVTGGNERGTGAGAMEVAVKFEHRNSKGCNYGPPYEWQVYNTLGGSYGVPR VHFKGRHGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVSCIAVESLTILDKMHSRGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDGSSGEHV EYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPQPLKQFLEIVVNLKFDEEPNYS KLISLFEGLLGPNPAIRPINTEGAQKIISQVGQKRGRLNMEEDDGQPRKKVRLGVPATQWISIYNARRPMKQRYHYNVADGRLAQHVERGIADGLLISSV ASCTNLWALIMDAGTGFSSQVYELSPFFLHKEWIMEQWEKNYYISSVAGSNNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSR WGIVMSRNAGFSDQVKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	1.4	0.8519
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	3.2	0.7555
AT2G30120			unknown protein		Lus10042267 [exp]	4.6	0.7672
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	5.5	0.8129
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	8.3	0.7879
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	9.2	0.7403
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	9.2	0.7763
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	9.5	0.7678
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	10.8	0.7557
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	11.8	0.7801

Compare expression of checked genes

Lus10013737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.