Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 62 / 2e-10 F-box family protein (.1) AT4G10695 51 / 2e-07 CDC68-related (.1) AT3G56470 51 / 6e-07 F-box family protein (.1) AT4G00893 49 / 3e-06 unknown protein AT3G18720 48 / 7e-06 F-box family protein (.1) AT2G44735 46 / 2e-05 unknown protein AT4G10660 45 / 6e-05 CDC68-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024904 [exp] 211 / 1e-61 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10019040 [exp] 135 / 9e-39 ND / Lus10019204 [exp] 123 / 2e-32 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10013731 [exp] 120 / 3e-31 AT1G17860 172 / 5e-53 Kunitz family trypsin and protease inhibitor protein (.1) Lus10029943 [exp] 76 / 1e-14 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10014208 [exp] 69 / 1e-12 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10022706 [exp] 69 / 1e-12 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10004476 [exp] 69 / 1e-12 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10017027 [exp] 69 / 2e-12 AT1G57790 286 / 6e-93 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106800 [exp] 91 / 4e-20 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.006G212600 [exp] 67 / 2e-12 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.016G079300 [exp] 67 / 4e-12 AT1G57790 313 / 5e-105 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013738 pacid=23169095 polypeptide=Lus10013738 locus=Lus10013738.g ID=Lus10013738.BGIv1.0 annot-version=v1.0 ATGATGCAATCCCCGTCGTGGGCAGACCTTTCCCCTGAACTGCTGCAATTGATTCTGTCGCAACTGATCGAGAAGGATGTCCCGATGTTCCGAGCAGTTT GTCGTCAGTGGAACTCTGCCCCTTCACTGATATACGAAATCGCCAAACACCCATTCTTGCTTCGCCACCGCCCCGATAATAACTGCGAGCTCTACTCTCC GCCCTACAACAAAACCTATTTCCTCCACCACGACGCTCTCCGTGACACACAAATCCACAGCTGCAACCATGGCTGGTTACTCTTATCCAGAGGCCACCGT GATTTTTCTTCCTCAACCCCACCACCGCAGAAATCATCCACCGTGACTAATCTACCGTTTAATGCAATGAGCTTTACGGCCCCGCCCACCTCCCCGGATT GTGTGGTTATCCGCGTTGTTGATGTCAAACCACTTCGATCGAGGACGGAAAGTGATGATTATTCCTTCGCTGGCAAAATCAAGACGAATCGCAGCGAGTT TAGACTTACTTGCATGGTGAACTTCAAGTGGTATGGTTCTAGCTCAGCTCCGGCATTTCACAAAGGGGCTTTCTACTGCTTAGGCCGAGAACGGAGGTTG GGGGTTTTCGACCCTAGGGAGGAGAATAAGAGGAACATGTGGAAAGTAATCGATGTCCAGTGTCGTGCAGCTTTCTACAGCCATATTCGCAACGTAGCTT ACTTGATGGAATCGAGTAAGGGAGAGCTGATTTCGGTAGTGGTCGGACCAGAAGCAGACTTCGTGCGGGTTTTCAAATATAATCATGTCCTTCAACTGTG GCAGAGTCTTGATAGCATCGGAGATCAAGTGGCTCTTCTGAGTCCCACTTCGTCCGTGGTTTTATCGTGCAAGGAGCTTCAAGCTAAGGGATTGGAGAAC ACCATTCACTTGCCGAGATTCCATGGAACCCTGCAACATCTACTACTCGCTGTCGACTACAGAATTGCACCCCTTTTAGAATGGACACACATCAACGGAG CTTCCATTGAACTGTACTTGGATGGTACCCAAGTTTCAACGTCTTTCTAG
AA sequence Show only first row Show all	>Lus10013738 pacid=23169095 polypeptide=Lus10013738 locus=Lus10013738.g ID=Lus10013738.BGIv1.0 annot-version=v1.0 MMQSPSWADLSPELLQLILSQLIEKDVPMFRAVCRQWNSAPSLIYEIAKHPFLLRHRPDNNCELYSPPYNKTYFLHHDALRDTQIHSCNHGWLLLSRGHR DFSSSTPPPQKSSTVTNLPFNAMSFTAPPTSPDCVVIRVVDVKPLRSRTESDDYSFAGKIKTNRSEFRLTCMVNFKWYGSSSAPAFHKGAFYCLGRERRL GVFDPREENKRNMWKVIDVQCRAAFYSHIRNVAYLMESSKGELISVVVGPEADFVRVFKYNHVLQLWQSLDSIGDQVALLSPTSSVVLSCKELQAKGLEN TIHLPRFHGTLQHLLLAVDYRIAPLLEWTHINGASIELYLDGTQVSTSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	0	1
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	1.4	0.9011
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	4.6	0.8759
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	8.2	0.8835
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	11.0	0.8556
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	14.1	0.8476
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	19.7	0.8024
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	20.2	0.8369
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	22.6	0.7583
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	30.2	0.8207
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	33.8	0.8153

Compare expression of checked genes

Lus10013738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.