Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58040 493 / 6e-178 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 479 / 4e-172 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 448 / 9e-160 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 440 / 2e-156 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 350 / 1e-122 TRAF-like superfamily protein (.1) AT3G13672 247 / 6e-82 TRAF-like superfamily protein (.1.2) AT5G37870 109 / 8e-28 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 106 / 3e-26 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 101 / 7e-25 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 102 / 1e-24 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039202 [exp] 638 / 0 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10002761 [exp] 442 / 7e-157 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 441 / 8e-157 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 440 / 3e-156 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 440 / 4e-156 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 439 / 3e-155 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 433 / 1e-153 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 70 / 8e-14 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 69 / 1e-13 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215400 [exp] 533 / 0 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 504 / 0 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G010500 [exp] 496 / 3e-179 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1) Potri.016G059700 [exp] 493 / 6e-178 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.012G015500 [exp] 449 / 7e-160 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 447 / 3e-159 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 447 / 4e-159 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 447 / 5e-159 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 441 / 4e-157 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 441 / 4e-157 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10013739 pacid=23169039 polypeptide=Lus10013739 locus=Lus10013739.g ID=Lus10013739.BGIv1.0 annot-version=v1.0 ATGGCCCCGGGAGGAATCACCTGCAGAGAAGAGATAGAGTCTCGAATAACATACACAGATTGCGATACAGTAACATTTAATGCAGAGTCAAGTGCTTCCT CTTTTCGAAAAGCTGCCACTATATTAGGTGGAAGTCTCGGGGCATCGTCAACTGGAAATGTGCAGGACTTGCTAGAATGTCCAGTTTGCATGAATCTAAT CTACCCTCCCATTTACCAGTGTCCTAATGGTCACACCCTTTGCTCGAACTGCAAAGCCCGAGTACACAACTCTTGCCCGACGTGTCGTGGGGAACTTGGC AACATAAGGTGCTTGGCTCTCGAGAAAGTTGCTGAATCGCTCGAAGTTCCTTGTAAATACCAGAACTTTGGGTGTTTTGAAATATTCCCGTACTATAGCA AGCAAAGGCATGAAAAGAGCTGCAAATACCGTCCCTATAGTTGCCCTTATGCCGGAGCTGAATGTTCATTCACCGGTGACATTCCCCAGCTTGGCACGCA TCTGAAAAATGATCATAAGGTTGACATGCACGATGGGTGCACCTTCAATCACAGATATGTGAAGTCCAATCCCCAAGAAATCGACAATGCCACTTGGATG TTAACTGTCTTCAATTGCTTCGGCCGACAATTCTGCTTACACTTTGAGGCATTTCGTCTGGGAATGGCACCGGTTTACATGGCCTTCCTGAGATTCATGG GCACTGAAGAGGAGGCAAGACAATTCAGTTACAGCTTAGAAGTTGGCGGAAACGGGAGAAAGCTGACATGGCAAGGAATACCAAGGAGCATCCGCGATAG CCATAAGAAAGTAAGAGATAGCCAGGATGGATTGATAATCCAGAGAAACTTGGCACTCTTCTTTTCTGGTGGGGATAGGCAGGAACTGAAGCTCAAAGTC TCTGGGCGTATATGGAAAGAACAATAA
AA sequence Show only first row Show all	>Lus10013739 pacid=23169039 polypeptide=Lus10013739 locus=Lus10013739.g ID=Lus10013739.BGIv1.0 annot-version=v1.0 MAPGGITCREEIESRITYTDCDTVTFNAESSASSFRKAATILGGSLGASSTGNVQDLLECPVCMNLIYPPIYQCPNGHTLCSNCKARVHNSCPTCRGELG NIRCLALEKVAESLEVPCKYQNFGCFEIFPYYSKQRHEKSCKYRPYSCPYAGAECSFTGDIPQLGTHLKNDHKVDMHDGCTFNHRYVKSNPQEIDNATWM LTVFNCFGRQFCLHFEAFRLGMAPVYMAFLRFMGTEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKV SGRIWKEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	1.4	0.9011
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	5.0	0.8803
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	6.8	0.9065
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	7.5	0.8977
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	12.8	0.8320
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10040725 [exp]	14.6	0.8160
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	15.0	0.8871
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	16.4	0.8562
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	18.1	0.8728
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	21.5	0.8317

Compare expression of checked genes

Lus10013739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.