Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50480 1043 / 0 THFS 10-formyltetrahydrofolate synthetase (.1) AT2G12280 144 / 5e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G12200 95 / 8e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039200 [exp] 1136 / 0 AT1G50480 1137 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010800 [exp] 1071 / 0 AT1G50480 1123 / 0.0 10-formyltetrahydrofolate synthetase (.1) Potri.003G215100 [exp] 1067 / 0 AT1G50480 1087 / 0.0 10-formyltetrahydrofolate synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01268 [flax] [poplar] FTHFS Formate--tetrahydrofolate ligase
Representative CDS sequence Show only first row Show all	>Lus10013741 pacid=23169060 polypeptide=Lus10013741 locus=Lus10013741.g ID=Lus10013741.BGIv1.0 annot-version=v1.0 ATGGTCCTATCCAGCGCCACCTTGGTTGGTGGAGGAGTCGCATTTTGCTACTACCCATCATCATCATCGTCGTCGTCATCACGACCATCTTATTTTCTTA TCCATCGAACTAATAATCAGCCAACCCTGAAACCCAAAAGCAGATTACTCGAGGAAGCCAAAATGACTTCTTCTTCTTCCTCCAAAACACTGAGGAAGCT GGAGGTACTTTCTCCGGTCCCGGCTGACATCGATATTGCCAACTCTGTCGAGCCTTTCCACATTTCCGAGATTGCCAGCGCCCTCAATCTCCGGCCTAGC GATTACGATCTTTACGGCAAATACAAAGCCAAGGTGTTGCTGTCGGTTGTTGATCAGCTGAAAGGATCAAGTGATGGATACTACGTGGTTGTTGGTGGAA TCACTCCTACGCCACTTGGAGAAGGCAAATCCACTACTACAGTGGGACTCTGTCAAGCTTTGGGTGCATTCCTTGACAAAAAGGTTGTTACTTGTGTCCG TCAACCATCACAAGGTCCAACCTTTGGAATTAAAGGAGGTGCTGCCGGTGGTGGTTACAGTCAAATAATCCCAATGGATGAGTTCAATCTGCATATGACT GGCGATATTCATGCTATAACAGCTGCAAACAATCTGCTTGCAGCAGCAATTGATACCAGGATATTTCATGAATCCACCCAATCTGATAAGGCACTTCTAA ATCGTCTATGTCCACCAAACAAGGAAGGAAAGCGAAAGTTTAGCGACATAATGTTCAGGCGTCTGAATAAGCTTGGCATCACAAAGACTAGTCCCGAGGA ACTGACTCCCGACGAGGTGAAGAAATTTGCAAGACTTGATCTTGATCCGGAATCAGTTACTTGGAGGAGAGTGATGGATGTTAACGATCGGTTCTTGAGA AAGATCAGTATTGGTCAAGGTCCGGACGAGAAAGGGATGGTGAGAGAAACAGCTTTTGATATCTCTGTGGCGAGTGAGATAATGGCCGTGTTGGCCCTCA CAACATCACTAGCTGATATGAGAGAGAGGCTTGGGAAAATGGTGGTTGGAAACAGCAGAGCTGGTGACCCTGTAACTGCTGATGATCTTGGCGTTGGAGG AGCGTTAACAGTGTTAATGAAGGATGCCATTAACCCCACTCTGATGCAGACCCTCGAAGGGACTCCTGTTCTTGTTCATGCGGGTCCTTTTGCAAATATA GCTCATGGAAATTCTTCAGTGGTGGCTGACAAGATTGCTTTGAAGCTTGTAGGACCAGGAGGTTTTGTGGTAACCGAAGCAGGGTTTGGTGCTGATATAG GTACGGAGAAGTTTATGAACATAAAGTGTCGTTATAGTGGCTTAAAACCGCAATGTGCTGTAATTGTCGCGACGATCAGGGCCCTTAAAATGCACGGTGG TGGACCTCCAGTTGTTGCGGGAAAGCCCCTTGACCATGCTTACACTACCGAGAATGTAGCTTTGGTCGAAGCTGGCTGTGTTAACTTGGCACGGCATATA GCGAACACAAAGGCTTATGGTGTGAATGTTGTCGTTGCGGTGAATATGTTCTCGACGGACACTGAAGCGGAAATGAATGCTGTTAAGAACGCGGCAATGG CCGCTGGTGCATTTGATGCTGTTGTCTGTTCACACCATGCCCATGGTGGAAAAGGAGCGGTGGATCTTGGGATTGCGGTCCAACGAGCCTGCGAGAATGT CAGTCAGCCATTGAAGTTTCTATACTCTCTGGACATTGGTATCAAAGAGAAGATCGAGGCGATAGCAAAGTCGTACGGTGCCAGTGGCGTAGAGTACTCA GAGCTGGCCGAGAAACAAATAGAGATGTACACTAAACAAGGATTCGCAGCTCTACCGATCTGCATGGCGAAAACCCAGTATTCTTTTTCACACAATGCAG CTGAGAAGGGAGCTCCGAGCGGCTTCATCTTACCGATAAGGGATGTGAGGGCAAGCATTGGGGCTGGTTTCATCTACCCTTTAGTTGGAACAATGAGTAC AATGCCTGGTCTTCCAACAAGACCCTGCTTCTACGACATTGACATCGACACCACCACCGGAAAAGTCATCGGTCTCTCTTGA
AA sequence Show only first row Show all	>Lus10013741 pacid=23169060 polypeptide=Lus10013741 locus=Lus10013741.g ID=Lus10013741.BGIv1.0 annot-version=v1.0 MVLSSATLVGGGVAFCYYPSSSSSSSSRPSYFLIHRTNNQPTLKPKSRLLEEAKMTSSSSSKTLRKLEVLSPVPADIDIANSVEPFHISEIASALNLRPS DYDLYGKYKAKVLLSVVDQLKGSSDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCVRQPSQGPTFGIKGGAAGGGYSQIIPMDEFNLHMT GDIHAITAANNLLAAAIDTRIFHESTQSDKALLNRLCPPNKEGKRKFSDIMFRRLNKLGITKTSPEELTPDEVKKFARLDLDPESVTWRRVMDVNDRFLR KISIGQGPDEKGMVRETAFDISVASEIMAVLALTTSLADMRERLGKMVVGNSRAGDPVTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANI AHGNSSVVADKIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATIRALKMHGGGPPVVAGKPLDHAYTTENVALVEAGCVNLARHI ANTKAYGVNVVVAVNMFSTDTEAEMNAVKNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVSQPLKFLYSLDIGIKEKIEAIAKSYGASGVEYS ELAEKQIEMYTKQGFAALPICMAKTQYSFSHNAAEKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTTTGKVIGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	0	1
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	1.0	0.9820
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	1.4	0.9817
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	3.0	0.9753
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	3.5	0.9672
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	3.9	0.9714
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	4.9	0.9731
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	5.5	0.9702
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	7.7	0.9670
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	8.8	0.9671
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	11.2	0.9670

Compare expression of checked genes

Lus10013741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.