Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 337 / 6e-117 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 101 / 4e-25 unknown protein AT3G28970 45 / 3e-05 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039198 [exp] 414 / 2e-147 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 267 / 1e-89 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 263 / 1e-87 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 238 / 6e-79 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10009599 [exp] 99 / 3e-24 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 99 / 4e-24 AT3G12760 383 / 3e-136 unknown protein Lus10005235 [exp] 45 / 5e-05 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10030685 [exp] 45 / 5e-05 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047900 [exp] 345 / 5e-120 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 343 / 2e-119 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.018G112200 [exp] 288 / 6e-98 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 99 / 4e-24 AT3G12760 415 / 1e-148 unknown protein Potri.004G122100 [exp] 50 / 1e-06 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 47 / 1e-05 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding CL0220 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10013742 pacid=23169107 polypeptide=Lus10013742 locus=Lus10013742.g ID=Lus10013742.BGIv1.0 annot-version=v1.0 ATGTCATTGCAGGTTGCCCACTTCTTGGACATTCCGTGGTTGGTGGATCGTGCGTGTAAGCTTCTGGCAGAGTTTGTCGAGGAAAATGGTCTTGATGAGA TACGGGAAGCTCTTGGTAACCGGGATGACTTCTCTGAGTTAGAACATCAATGGTTTTGCAGGGTCTACATTGAAAATTTTGACGAAGAAATTCTGAAGGG CTGTGTTTGGAGGTCTACTAGTTGCATACTAGCAAGTAGCGACACTTTCGCTGCCATTCTATCTTTCTGCTTCAACAAGATGAGTCGTTCGTCGTCGAGG AAGACGAGTCAATCCGATTCCACAGCTCCCGTCGCTTCTTCCGCCACCGGCCTTTTCCGTTCTGCTACAAGTAAAGCATCTTCCAAAGAGACTGATCGGA TTGATAACTTGTTTAACACTTATGCAAACAAGTCTTCTGGTCTTATTGACCCGGAAGGAATTGAAGCTCTGTGTTCAGATTTAGAGGTGGATCATACTGA TGCCAGGATCTTAATGCTAGCCTGGAAAATGAAAGCTGAAAAACAAGGATACTTCACACTGGATGAGTGGCGAAGAGGCCTTAAAGCACTGCGGGCTGAT AATGTAAACAAATTGAAGAAGGCTCTCCCAGAACTTGAGAAAGAGGTTAAAAGGCCATCAAACTTCGTGGATTTCTATTCTTTCGGATTTCAGTATTGCC TAACGGAGGAGAAACAGAAAAGCATAGACATTGAAAGCATCTGCCTGTTACTTGATCTCGTATTGGGATCCCAGTTTCGTCCTCAGGTTGATTACTTCAT TGAGTATATGAAGATTCAGAACGATTATAAGGTCATAAACATGGACCAGTGGTTGGGGTTTTACCGTTTCTGCTCCGAGATAAGTTTCCCAGATCTTAGC AACTATGATCCAGAACTCGCATGGCCTTTAATTCTGGACAATTTTGTCGAATGGATTCGAGCAAAACAGACCTGA
AA sequence Show only first row Show all	>Lus10013742 pacid=23169107 polypeptide=Lus10013742 locus=Lus10013742.g ID=Lus10013742.BGIv1.0 annot-version=v1.0 MSLQVAHFLDIPWLVDRACKLLAEFVEENGLDEIREALGNRDDFSELEHQWFCRVYIENFDEEILKGCVWRSTSCILASSDTFAAILSFCFNKMSRSSSR KTSQSDSTAPVASSATGLFRSATSKASSKETDRIDNLFNTYANKSSGLIDPEGIEALCSDLEVDHTDARILMLAWKMKAEKQGYFTLDEWRRGLKALRAD NVNKLKKALPELEKEVKRPSNFVDFYSFGFQYCLTEEKQKSIDIESICLLLDLVLGSQFRPQVDYFIEYMKIQNDYKVINMDQWLGFYRFCSEISFPDLS NYDPELAWPLILDNFVEWIRAKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	4.1	0.8490
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	4.2	0.7978
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	6.0	0.7841
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	9.4	0.7843
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	11.4	0.7837
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	12.4	0.8261
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	13.1	0.8118
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	14.2	0.7965
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	15.3	0.8071
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	15.9	0.7770

Compare expression of checked genes

Lus10013742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.