Lus10013744 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05570 2935 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
AT5G13000 2313 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2)
AT2G31960 2023 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2)
AT5G36870 1675 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1)
AT2G13680 1667 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
AT1G06490 1563 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
AT3G59100 1524 / 0 ATGSL11 glucan synthase-like 11 (.1)
AT3G14570 1482 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2)
AT3G07160 1241 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1)
AT2G36850 1234 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037469 2876 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10039199 2602 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Lus10003920 2073 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10020893 1565 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Lus10001424 1513 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Lus10014796 1512 / 0 AT2G36850 2935 / 0.0 CHORUS, glucan synthase-like 8 (.1)
Lus10020750 1469 / 0 AT1G06490 2003 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Lus10001056 1465 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Lus10042478 1418 / 0 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G012200 2366 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.003G214200 2326 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.001G230000 2110 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.005G058300 1661 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Potri.005G203500 1563 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Potri.002G058700 1553 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Potri.011G095100 1492 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2)
Potri.015G089300 1253 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1)
Potri.001G011900 1217 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
Potri.013G131300 1173 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04652 Vta1 Vta1 like
CL0111 GT-C PF02364 Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence
>Lus10013744 pacid=23169081 polypeptide=Lus10013744 locus=Lus10013744.g ID=Lus10013744.BGIv1.0 annot-version=v1.0
ATGGCGTCTTCGTCTAGGATGGGTTCGGATCAGGCCACACCTCCGCAGCCTCAGCAGCGGAGGATCATGAGGACGCAGACGGCTGGGAATCTTGGAGAGT
CCATATTTGACAGTGAGGTTGTGCCTTCTTCTCTGGTGGAGATTGCGCCTATTCTTCGTGTGGCTAATGAAGTGGAGTCCAGTAACCCCAGGGTTGCCTA
TCTCTGCCGATTTTATGCATTTGAGAAAGCTCATAGGTTGGATCCCACTTCCAGTGGAAGAGGTGTTCGTCAATTTAAAACTGCACTACTCCAACGTCTT
GAAAGGGAAAATGATCCCACCTTGAAGGGTAGGGTTAAGAAAAGTGATGCGAGGGAAATGCAGAGCTTTTATCAACACTATTATAAAAAGTATATCCAAG
CTTTGCAAAATGCTGCTGATAAAGCCGATCGGGCACAGCTTACCAAGGCCTACCAAACTGCTAATGTGCTTTTTGAGGTTTTGAAGGCTGTAAATATGAC
ACAATCAATTGAAGTTGACAGAGAGATTTTAGAAGCTCAAGACAAGGTTGCGGAGAAGACTCAACTATACGTTGCTTACAATATACTCCCGTTGGATCCT
GATAGTGCGAACCAGGCGATCATGAGATATCCTGAGATCCAAGCTGCTGTTGTTGCTCTTCGCAACACAAGGGGGCTTCCATGGCCCAAGGATCATAAGA
AGAAGGATGAAGATATATTAGACTGGCTTCAGGCGATGTTTGGGTTCCAGAAAGGTAACGTTGCAAATCAAAGGGAGCATTTAATCCTGTTGTTGGCGAA
TGTGCACATAAGGCAGTTTCCGAAGATGGATCAACAACCCAAGTTGGATGACCGTGCATTAACTGATGTCATGAAGAAGCTTTTTAAGAATTACAAGAAG
TGGTGCAAATATTTGGACAGGAAAAGCAGTCTCTGGATGCCAACCATACAACAAGAAGTGCAGCAGCGCAAGCTGCTATACATGGGTCTTTATCTTCTGA
TATGGGGTGAAGCTGCAAACTTGAGATTTATGCCAGAGTGCTTATGCTACATCTACCACCATATGGCATTTGAGCTTTATGGCATGCTAGCAGGAAATGT
GAGTCCCATGACAGGAGAAAATGTAAAGCCTGCCTATGGTGGTGAAGAAGAGGCTTTCCTCACAAAAGTTGTTACACCTATCTACAATGTCATTGCAAAG
GAAGCTGAAAGGAGCAGAAAAGGGAAGTCAAAGCATTCTCAGTGGAGGAACTATGATGATCTGAATGAATATTTCTGGTCAGTCGATTGCTTCCGATTAG
GTTGGCCAATGCGTGCAGATGCCGATTTCTTTTCTCTACCGGCTGAACAGCATCATTTTGAGAAAGATGGGGACAACAACAAGCCAGCTTATAAAGATCG
ATGGGTGGGAAAGGTCAATTTTGTTGAGATTCGTACATTCTGGCACATCTTCAGGAGCTTTGATAGGATGTGGAGTTTTTTTATCCTATGCTTGCAGGCT
ATGATTATCATTGCTTGGAATGATTCTGCTGGCCGTCCTATCTTCACTGGTGATGTAGTCAAGAAAGTATTGAGTGTTTTTATAACAGCCGCCATATTGA
AACTAGGCCAAGCTGTGCTATTTCTCTTTCCCTTCGTGCGGAGGTTCCTAGAGCAGTCCCACTATAGAATAGTGATGCTCATGATGTGGTGGTCTCAGCC
TCCACTGTATGTTGCAAGGGGAATGCATGAAAGCACACTTGCACTGTTTAATTATACAGTGTTCTGGGTTCTTCTCATTATTACAAAGCTGGCCTTCAGT
TACTTTATTGAGATAAGGCCTTTAGTTGGTCCAACAAAAGCTATAATGAGTGTCCATATAAGTACTTTCCAATGGCATGAATTCTTCCCTCAAGCTAGGA
ACAATATCGGAGTGGTGATTGCTCTTTGGGCACCAATTATTCTTGTCTATTTCATGGATGCCCAGATTTGGTATGCCATATTTTCCACAATTTTCGGTGG
TATATATGGTGCATTTCGACGACTTGGAGAGATTCGAACTTTGGGAATGCTTCGCTCACGTTTTCAGTCATTGCCGGGTGCTTTCAATGCCCGCTTAATG
CCAGAAGAAAGGAGTGAACCAAAGAAGAAAGGATTAAGAGCTACCTTATCTCGCAATTTTGCAACTATACCGTCCAACAAAGAGAAAGAGGCTGCAAGAT
TTGCTCAGTTGTGGAATAAAATTATAACTAGTTTTAGAGAGGAAGATCTTATCAGTAACAGGGAAATGGACTTGTTGCTTGTGCCATATTGGGCTGACCG
TGATCTAGATCTCATACAATGGCCTCCATTTCTATTGGCTAGCATGATACCAATAGCATTGGACATGGCCAAGGATAGTAATGGGAAGGACAAAGAGCTG
AAAAAGAGAATTGAAGCAGAGAGCTATATGTCATGTGCTGTTCGTGAATGTTATGCTTCATTTAGGAACATTATCAAGTTCTTAGTGCAAGGCGACCGTG
AAAAAGAGGTAATTGAATATATATTTGAAGAAGTGGACAAGCACATTGAAGCAGGTGATCTTATCAGCGAGTACAAGATGAGCGCGCTTCCCAACCTCTA
TGAGCATTTTGTGCATATATCTAGTCTGGTTGATTCAATTCATGGCGGACCTGGCCATGAGGGGATGGTTCCTCTTGAGCAACAATATCAACTGTTCGCA
TCTTCTGGCGCTATCAAATTTCCCATTCAACCTGTAACAGAAGCATGGAAAGAAAAGATTAAGCGTCTTGATCTTTTGCTTACCACCAAAGAATCAGCAA
TGGATGTACCATCCAACCTGGAAGCCAGGAGGCGGATTTCTTTCTTTTCGAATTCGTTATTCATGGATATGCCCACTGCACCAAAAGTTCGCAATATGCT
TTCCTTCTCTGTTTTGACTCCCTACTACACAGAAGAAGTTTTATTCTCCTTGCGGGAATTGGAAGTACCAAATGAAGATGGGGTTTCAATCCTATTTTAC
CTGCAGAAGATCTATCCTGATGAATGGAATAACTTCCTTGAGCGAGTGAATTGCACCGGTGAAGAAGAACTCAAGGGAATAGATGACCTTGAAGAAGAAC
TTCGTCTATGGGCATCATACAGGGGCCAAACCCTGACGAGAACTGTGAGAGGAATGATGTACTACCGTAAGGCGTTGGAGCTTCAAGCATTTCTTGATAT
GGCTAGAGATGAAGATCTTATGGAGGGGTATAAGGCCATAGAACTGAATACTGAACTTCATTTGAGAGGAGAAAGATCATTGTTGGCCCAATGTCAAGCC
ATTGCTGATATGAAATTCACATATGTGGTGTCCTGCCAGCAATATGGTATCCACAAGCGGTCTGCAGACCCTCGAGCACAAGACACTCTGAGGCTCATGA
CTGCGTACCCGTCACTTCGTGTGGCGTACATTGATGAGGTTGAAGAGCCTAATAAAGATAAATCAAAAAAGGTCAACCAAAAAGTTTATTACTCAGTCTT
AGTGAAGGCTGCCTCACCTAAGGCCATCGATTCTTCAGAGCCTGTTCAGCACTTGGATGAGGTTATTTATCGAATCAAACTACCTGGGCCAGCCATCTTG
GGCGAGGGGAAACCAGAAAACCAGAATCATGCCATCATTTTTACACGAGGAGAGGGTTTACAGACTATAGACATGAACCAGGATAACTACATGGAGGAAG
CCTTGAAAATGAGAAATCTGTTGCAAGAATTTCTCAAAAAGCATGATGGTGTGAGATATCCTACCATACTTGGTCTTAGGGAGCACATATTCACTGGAAG
TGTTTCTTCTCTTGCATGGTTTATGTCAAATCAGGAGACTAGTTTTGTGACTATTGGTCAGAGACTACTAGCTAACCCGCTCAAGGTTCGGTTTCACTAT
GGTCATCCAGATGTGTTTGATAGGCTCTTCCACCTGACCAGAGGGGGAGTCAGTAAAGCCTCCAAGGTTATCAATCTCAGTGAGGATATATTTGCTGGTT
TCAATTCCACTCTTCGTGAAGGGAATGTTACCCATCACGAATACATACAGGTTGGGAAAGGAAGAGATGTCGGTCTCAATCAAATCTCTATGTTTGAAGC
CAAAATTGCTAATGGCAATGGGGAGCAGACTCTGAGTAGAGATATATACCGTCTTGGACACCGATTTGATTTTTTCCGCATGTTGTCTTGCTATTTCACC
ACAGTTGGTTTCTACTTCAGTACTCTGATAACTGTGCTAATTGTTTACGTATTCCTTTATGGTCGGCTTTATCTGGTTCTGAGTGGACTGGAAGAAGGCC
TGAAAAATCAGCGAGCTATTCGAGATAACAAGCCTCTGCAGGTGGCTCTTGCTTCTCAGTCGTTTGTTCAAATTGGATTTCTCATGGCATTGCCCATGCT
GATGGAAATCGGGCTGGAGAGAGGTTTCCGCACTGCCCTTAGTGAATTTGTACTGATGCAACTTCAGCTGGCACCGGTGTTTTTCACATTCTCTCTCGGA
ACCAAGACTCATTACTACGGACGGACTTTACTTCACGGAGGTGCCAAATACAGGCCTACAGGCCGAGGTTTTGTTGTGTTCCATGCCAAGTTTGCAGACA
ATTACAGGCTTTATTCACGTAGTCACTTTGTCAAGGGGATTGAGATGATTATTTTACTTGTCGTCTATGAAATCTTCGGGCAAACCTATAGAAGTGCTGT
TGCCTATGTCTTGATCACCATTTCAATGTGGTTCATGGTTGGTACCTGGCTGTTTGCTCCGTTCCTCTTCAATCCTTCTGGATTCGAGTGGCAGAAGATT
GTTGATGATTGGACTGATTGGAACAAGTGGATAAGTAACAGAGGTGGCATAGGTGTGCCACCAGAAAAGAGCTGGGAATCATGGTGGGAGGAGGAACAAG
AACATTTACATCACTCCGGGAAGCGTGGTATCGTTGCGGAGATACTTTTATCTTTGCGGTTCTTTATATACCAGTATGGACTGGTATACCACTTATCCAT
CACAAAGAAAGCCAAGACCAAAAGTTTTCTTGTTTATGGAATATCTTGGCTCGTCATTTTCTTGGTATTGTTTGTGATGAAGACGGTGTCTGTTGGCCGG
CGAAAATTCAGTGCAAACTTCCAGCTTGTCTTCCGGCTGATCAAGGGATTGATCTTCATTACTTTCATTTCCATTTTGGTCGTTCTCATAGCATTACCTC
ACATGACGATCCAGGATATCATTGTTTGCATTCTTGCATTCATGCCTACCGGCTGGGGAATGCTTCTGATTGCACAAGCTTGTAAACCAGTTGTTCATCG
AGCTGGGTTCTGGGGATCAGTTCGAACGCTAGCTCGTGGGTACGAGATTCTTATGGGCCTACTTCTTTTCACTCCGGTTGCATTCCTTGCTTGGTTCCCA
TTCGTGTCCGAGTTCCAGACTCGCATGCTTTTCAACCAAGCATTCAGCAGAGGTCTACAGATTTCACGTATTCTCGGCGGGCAGAGGAAAGATCGATCTT
CGCGCAACAAGGAGTGA
AA sequence
>Lus10013744 pacid=23169081 polypeptide=Lus10013744 locus=Lus10013744.g ID=Lus10013744.BGIv1.0 annot-version=v1.0
MASSSRMGSDQATPPQPQQRRIMRTQTAGNLGESIFDSEVVPSSLVEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRL
ERENDPTLKGRVKKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKAYQTANVLFEVLKAVNMTQSIEVDREILEAQDKVAEKTQLYVAYNILPLDP
DSANQAIMRYPEIQAAVVALRNTRGLPWPKDHKKKDEDILDWLQAMFGFQKGNVANQREHLILLLANVHIRQFPKMDQQPKLDDRALTDVMKKLFKNYKK
WCKYLDRKSSLWMPTIQQEVQQRKLLYMGLYLLIWGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPMTGENVKPAYGGEEEAFLTKVVTPIYNVIAK
EAERSRKGKSKHSQWRNYDDLNEYFWSVDCFRLGWPMRADADFFSLPAEQHHFEKDGDNNKPAYKDRWVGKVNFVEIRTFWHIFRSFDRMWSFFILCLQA
MIIIAWNDSAGRPIFTGDVVKKVLSVFITAAILKLGQAVLFLFPFVRRFLEQSHYRIVMLMMWWSQPPLYVARGMHESTLALFNYTVFWVLLIITKLAFS
YFIEIRPLVGPTKAIMSVHISTFQWHEFFPQARNNIGVVIALWAPIILVYFMDAQIWYAIFSTIFGGIYGAFRRLGEIRTLGMLRSRFQSLPGAFNARLM
PEERSEPKKKGLRATLSRNFATIPSNKEKEAARFAQLWNKIITSFREEDLISNREMDLLLVPYWADRDLDLIQWPPFLLASMIPIALDMAKDSNGKDKEL
KKRIEAESYMSCAVRECYASFRNIIKFLVQGDREKEVIEYIFEEVDKHIEAGDLISEYKMSALPNLYEHFVHISSLVDSIHGGPGHEGMVPLEQQYQLFA
SSGAIKFPIQPVTEAWKEKIKRLDLLLTTKESAMDVPSNLEARRRISFFSNSLFMDMPTAPKVRNMLSFSVLTPYYTEEVLFSLRELEVPNEDGVSILFY
LQKIYPDEWNNFLERVNCTGEEELKGIDDLEEELRLWASYRGQTLTRTVRGMMYYRKALELQAFLDMARDEDLMEGYKAIELNTELHLRGERSLLAQCQA
IADMKFTYVVSCQQYGIHKRSADPRAQDTLRLMTAYPSLRVAYIDEVEEPNKDKSKKVNQKVYYSVLVKAASPKAIDSSEPVQHLDEVIYRIKLPGPAIL
GEGKPENQNHAIIFTRGEGLQTIDMNQDNYMEEALKMRNLLQEFLKKHDGVRYPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHY
GHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYFT
TVGFYFSTLITVLIVYVFLYGRLYLVLSGLEEGLKNQRAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFVLMQLQLAPVFFTFSLG
TKTHYYGRTLLHGGAKYRPTGRGFVVFHAKFADNYRLYSRSHFVKGIEMIILLVVYEIFGQTYRSAVAYVLITISMWFMVGTWLFAPFLFNPSGFEWQKI
VDDWTDWNKWISNRGGIGVPPEKSWESWWEEEQEHLHHSGKRGIVAEILLSLRFFIYQYGLVYHLSITKKAKTKSFLVYGISWLVIFLVLFVMKTVSVGR
RKFSANFQLVFRLIKGLIFITFISILVVLIALPHMTIQDIIVCILAFMPTGWGMLLIAQACKPVVHRAGFWGSVRTLARGYEILMGLLLFTPVAFLAWFP
FVSEFQTRMLFNQAFSRGLQISRILGGQRKDRSSRNKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05570 ATGSL6, ATGSL06... GLUCAN SYNTHASE-LIKE 6, callos... Lus10013744 0 1
AT5G13000 CALS3, ATGSL12 callose synthase 3, glucan syn... Lus10039199 1.0 0.9864
AT1G76740 unknown protein Lus10028114 3.2 0.9537
AT1G13110 CYP71B7 "cytochrome P450, family 71 su... Lus10028113 3.5 0.9540
AT1G16800 P-loop containing nucleoside t... Lus10035717 3.5 0.9628
AT5G51200 EMB3142 EMBRYO DEFECTIVE 3142, Protein... Lus10005726 4.6 0.9597
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Lus10037989 8.4 0.9377
AT4G38760 Protein of unknown function (D... Lus10012168 8.9 0.9403
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Lus10038928 9.6 0.9037
AT3G10650 AtNUP1 unknown protein Lus10034137 10.2 0.9440
AT5G43310 COP1-interacting protein-relat... Lus10021172 11.0 0.9245

Lus10013744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.