Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 77 / 4e-14 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G23030 77 / 5e-14 PUB11 ARM repeat superfamily protein (.1) AT1G68940 75 / 2e-13 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G71020 74 / 3e-13 ARM repeat superfamily protein (.1.2) AT5G65920 73 / 5e-13 ARM repeat superfamily protein (.1) AT5G42340 72 / 1e-12 PUB15 Plant U-Box 15 (.1) AT1G20780 72 / 1e-12 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G49780 71 / 1e-12 PUB26 plant U-box 26 (.1) AT1G29340 72 / 2e-12 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 70 / 6e-12 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039197 [exp] 1932 / 0 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10038340 [exp] 189 / 5e-49 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 181 / 3e-46 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 130 / 4e-30 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 112 / 2e-24 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 97 / 7e-20 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 92 / 6e-19 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10017444 [exp] 88 / 2e-17 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10023666 [exp] 87 / 4e-17 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214100 [exp] 958 / 0 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 567 / 0 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.012G118600 [exp] 187 / 3e-48 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 185 / 1e-47 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 115 / 1e-25 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 104 / 2e-22 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 101 / 2e-21 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G238500 [exp] 81 / 3e-15 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 80 / 5e-15 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G165900 [exp] 79 / 2e-14 AT5G42340 671 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10013745 pacid=23169109 polypeptide=Lus10013745 locus=Lus10013745.g ID=Lus10013745.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCCTTGGAGAAGCTGCTTCAAGAGGATGGTTTTAAAGGAAGACGATCAGGGATGCAAAACAGAGCCTCATTCAAAGCAGAAACCGCAAGTA GCACACTAGGAGCACGGCATGAGAGAGTTTCTGCATCAGGATCTAGAATCAGAACAGAAAGGGCAAGCTCTGATGCATATCGTTACGGCTCGAGGGGTGA ATCTTCAAGAAACAATGCTGGCACAAGCAGAAAGCCCCAGGAATATGAGGCGAGTAGACTTAAACCAGAGGGAAGAAAAGATGAAGCTAAGTGGGACAGG CCTCACACACGTTCTAGTATGAAACAGCACGATAAAACGCTAAAGACTCGCTCATCTGAAGATAGTGATCGAAGGGAGATAGATAATGAAGAAGATGGCA TTAGGGACATATATTCTGATAAAGAGTACAGATTTGACAGAAAGGATGGAATCTCTTCAGGGCACAGTGAAGTGGATGAGTGTCAAGAGAGGAGAAAGAA GGATTCAAGATTAGGTCCCCTTGGTGGGAACACCGGAAAAGATGTAATCAAATATGCAGATGTTAGCGGTGGTAATAGGAATAAGTCGAAACTTCTTGAA AACCATCATAGAAATTCTTCCCGGGGTCAAAAGGACAATAACTTTGAAGATGATGGAAGGACGAGGCCTGAAAACTCTCAAGTCCCTAGCTTTGCATTGG ATGAAGTTGCTGTCAAAGCCATGATCTCCATCTTAAATGGTTACACTAAACGTTTTTTCAGAGATGAGGAATTCCGGAACATGGTGCGTTACAATAGTTT CTCTTCATTTAACTTCAATGAGATAGAAGAAGTTGAAAGCATCGAGAAAAAAGTCATTACCAGTCTCGAGGATGCTATTTATACAGTGGAAGAAGCAGCT AAGGAGGACGTGAGTGCAAAAGAGCTGAAAAAAGCAGGTTTGCAACTTAGTGTAATAACGGGTTTGAACTCGAACGAGTTGAGAGATGGCTATACATTTG GAGTTCCAAACTCAAGGTTGTCAGCTTGTGCACAGTTCTACCTCAGTGCTGTGTACAAGCTACAGAAGAAGGACAGAGTTTCAGCCAAACATCTTCTCCA AGTATTCTGCGATTCACCATTTTGGGCACGATCGGTTTTGTTGCCTGACCTTTGGGAGTATTTGTTGTTTCCACATCTCTCACATTTGAAATTGTGGTAC AACCAAGAGGCAGAGTCTCTACCGGACACGCCAAGTAAGATAAGGAAAATTAAGCTTCTTGACAAAGTTTACAATGAAACGCTGGATTCTGGTACTTTCC AGTTTGCAACTTACTACAAGGATTGGCTGACCGAGGGCCTTGAAGCTCCTGATCTTCCTTCCATTCATATACCTTCATTATCAAGTCGAAGTCCATCACA AGGGAGTTCTAACGATCATCCTTCAGGGCTAAGCAGTCCATTGGGTCCTTATTCGCCTAGGCCCACGGTCAGCAAGAACTTATATGATGCTGTATATGGC CGTTCAAGTAAACTCGGAATCCAGGGGGGTGGAGAAAATAAGGATGCAGGCAACTCTCGTAATAGTGCAAAGAGCTCAGATGATTCTGGTGTTCAGGTTA AAGAAACACTAACATTTTCTTCTGAAACTGGCAATTATGAAAGGGTGGTAACTGGAAAAGATGGTGCATCCCTTCATGATTGTGTGCTATCATCAGCGTC CAATGAAGAATGGAAACTGGTTGAAATAAGAGATGAACCAGAAACACATTCCAATGGGGGGAAATTTAGTTGTCAAGAGGGGCAAGCTGCTCTCCAGGAC ACTCCTATATTGGCTAAGTCTCCAGATACAAAAACAAATGAACTAATACGCAAGGGCGTTTTGTCACTAATGGCTGCTTATGGAGAGTTTCCAGGCGATT CTGAATACTTCGAGGAAGGATCCTTCTACGCAAGCATCCCTCAGGACTTCGTGTGTCCGTTAACTGGAGAGTTATTTGAAGACCCAGTGACCTTGGAAAC TGGACAAACATTCGAGAGAGAAGCTTTTGCAGAATGGTTTAATCAGGGAAACAGGATGTGTCCAGTAACAGGGAAAGCTTTAGAATGTGCCAACCTTCCA CTGACAAACTTCATTTTGAAACGGGTCATTCATAATTGGAAGTTGGAACATTGTGGTCAATTGTTGGCTTTAGCGTCACAGATTATCAGAACATCACGTG ATTATGAGCCAAGACAAAGAGATGAGACAGCGACGTTTATTTTAGAGAAGCTCCTTACAACTTTCAGTGTAGATGAAAGAATCAAGAATGCTATACACCT TGTGTGTCTTGAAAGCTTGGAATTTCTTAGTAGAAGGTTTGCACAGGGAAATTTGGAAGAGAAAACCCGCGTAGCATTGCTTCTCTCCTGTTGTATTGAA GCTGACGGGGACTGCAGAAGTCTGATAGCCAGAAATGTAGATAAGCAGGGTCTCCTGAAACTACTTCACAGCAAGGAGCCCAACTCCAGACAGAATGCAG TTTCCCTTATGACCGAGCTAGTTTGTCTGAGCAGAAGGAGAGATGTTACATTGTTTTTTCGTGACGTGGAGAATGAGAAGATAACCAGTGTGATGCATGT GCTTCTTCTATACCTTCAGAGTTCCCTACCTGAACAAAAGCCCGCAGTTGCTGTACTGCTCTTACACTTGGACCTTCTGGCTGAACCTCAAAAGTACAGC ATATACAGGGAGGAAGCACTTGATGCCATTGCGACGGCCCTAGAATGCTGTGTAAACAATGACAGTGTCCGGGAAACTACTTGCAAAGCGCTGCTCCTCT TAGGTGGGTGCTTTTCTGCCACAGGGAAGACCTTGATAGAAAGTTTGATTCTAAAGCAAGCCGGGTCTGCTAATACATCTGAACCGAATTCTCAAGAAGA AATATATCTTGATGATTCAATTTCTCAGGAAGAAGAAGACGAGGCTGGTGTAGAGTGGTTGAGGAACTTGTCAAGATTGTTGCTCAGCAGCAACAGAGAT AAGTTGTTCTTGGAGTTGATTTCGCAATGTTTGAGCTCTGGTAAACCGCACTTGGTGAAAGCATGCCTAACCACAATCGCGTGGTTAAGTTGTGGCCTTT CTTCTCAATCTGATGCAGATTTCCAGCTTCCTGCTGGATTCTCTTCCCTCATTTCTGGACTTAAAGAATGCTTAGAGAACGGGAAGCAGATTGAGCACAT GGTCCTTGCTTCCATGTCTCTGCTAAATTTCAGTAGAATCCCAGAATGCAGGGTGATGTTAATTACAGTAGCAAAAGATATTGCAGATCCACTTCAAAGC CTTTTTAGTGAAACATGGACAGCAAAACAGCTCCATTCAATCATCACCTCTGACTCATAA
AA sequence Show only first row Show all	>Lus10013745 pacid=23169109 polypeptide=Lus10013745 locus=Lus10013745.g ID=Lus10013745.BGIv1.0 annot-version=v1.0 MASSLEKLLQEDGFKGRRSGMQNRASFKAETASSTLGARHERVSASGSRIRTERASSDAYRYGSRGESSRNNAGTSRKPQEYEASRLKPEGRKDEAKWDR PHTRSSMKQHDKTLKTRSSEDSDRREIDNEEDGIRDIYSDKEYRFDRKDGISSGHSEVDECQERRKKDSRLGPLGGNTGKDVIKYADVSGGNRNKSKLLE NHHRNSSRGQKDNNFEDDGRTRPENSQVPSFALDEVAVKAMISILNGYTKRFFRDEEFRNMVRYNSFSSFNFNEIEEVESIEKKVITSLEDAIYTVEEAA KEDVSAKELKKAGLQLSVITGLNSNELRDGYTFGVPNSRLSACAQFYLSAVYKLQKKDRVSAKHLLQVFCDSPFWARSVLLPDLWEYLLFPHLSHLKLWY NQEAESLPDTPSKIRKIKLLDKVYNETLDSGTFQFATYYKDWLTEGLEAPDLPSIHIPSLSSRSPSQGSSNDHPSGLSSPLGPYSPRPTVSKNLYDAVYG RSSKLGIQGGGENKDAGNSRNSAKSSDDSGVQVKETLTFSSETGNYERVVTGKDGASLHDCVLSSASNEEWKLVEIRDEPETHSNGGKFSCQEGQAALQD TPILAKSPDTKTNELIRKGVLSLMAAYGEFPGDSEYFEEGSFYASIPQDFVCPLTGELFEDPVTLETGQTFEREAFAEWFNQGNRMCPVTGKALECANLP LTNFILKRVIHNWKLEHCGQLLALASQIIRTSRDYEPRQRDETATFILEKLLTTFSVDERIKNAIHLVCLESLEFLSRRFAQGNLEEKTRVALLLSCCIE ADGDCRSLIARNVDKQGLLKLLHSKEPNSRQNAVSLMTELVCLSRRRDVTLFFRDVENEKITSVMHVLLLYLQSSLPEQKPAVAVLLLHLDLLAEPQKYS IYREEALDAIATALECCVNNDSVRETTCKALLLLGGCFSATGKTLIESLILKQAGSANTSEPNSQEEIYLDDSISQEEEDEAGVEWLRNLSRLLLSSNRD KLFLELISQCLSSGKPHLVKACLTTIAWLSCGLSSQSDADFQLPAGFSSLISGLKECLENGKQIEHMVLASMSLLNFSRIPECRVMLITVAKDIADPLQS LFSETWTAKQLHSIITSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10013745 [exp]	0	1
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	6.0	0.8316
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	7.0	0.8214
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	19.2	0.8150
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	27.5	0.8122
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	27.7	0.8113
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	32.3	0.7953
AT2G06040			unknown protein		Lus10033320 [exp]	39.5	0.7618
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	41.2	0.7818
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	44.9	0.7712
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	50.2	0.7851

Compare expression of checked genes

Lus10013745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.