Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 140 / 7e-41 unknown protein AT5G45830 114 / 3e-30 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18690 113 / 5e-30 unknown protein AT4G18680 107 / 6e-28 unknown protein AT4G18650 95 / 2e-23 transcription factor-related (.1) AT4G18660 79 / 6e-18 unknown protein AT1G58330 75 / 4e-16 ZW2 transcription factor-related (.1) AT1G09950 72 / 4e-15 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT5G06960 74 / 6e-15 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06950 73 / 8e-15 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039196 [exp] 451 / 2e-162 AT3G14880 135 / 1e-38 unknown protein Lus10042453 [exp] 269 / 2e-90 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 241 / 1e-79 AT3G14880 135 / 5e-39 unknown protein Lus10013711 [exp] 160 / 2e-48 AT3G14880 251 / 2e-84 unknown protein Lus10039194 [exp] 121 / 4e-35 ND / Lus10015276 [exp] 118 / 1e-31 AT4G18690 204 / 6e-65 unknown protein Lus10026217 [exp] 108 / 2e-29 AT3G14880 83 / 7e-20 unknown protein Lus10028231 [exp] 102 / 4e-26 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10029229 [exp] 92 / 5e-22 AT4G18650 207 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 251 / 2e-83 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 153 / 9e-46 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 110 / 4e-29 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G029800 [exp] 71 / 9e-14 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 68 / 5e-13 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 67 / 1e-12 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.016G036500 [exp] 65 / 9e-12 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.005G082000 [exp] 62 / 7e-11 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.006G039000 [exp] 61 / 2e-10 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.005G170500 [exp] 55 / 1e-08 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013746 pacid=23169154 polypeptide=Lus10013746 locus=Lus10013746.g ID=Lus10013746.BGIv1.0 annot-version=v1.0 ATGGTGGAGAACAACTCGACGTCGTTCAAGGACTACTATGACCAATTGTTAGTGAACCAAGAAAGAGACCTACGTGATCTGATTTCGGCGGCCAAAGACT ACGACAATGACGACCGCAGGAGCGAACTCCGAGGGCTGACGAGGCGGGTAATGGGGCACTACGAGGAGTACTACAGGGCAAAATCCCAGTGGGCTCACGG AAAGGTACTCTCCCTGTTGTCGCCGCCGTGGAAAACCAGTCTAGAGGCAGCCTTGACATGGATAGGAGGGTGGCGCGCATCCATGTCCTTCCACATCATC TACTCCAAGTCGGGGCTCCAGTTAGAGTCCTGGATACAAAACATGATCCAGGCTTCATCACCGGGCTCCGACTTGGCGGACCTCTCGTCCGAGCAGTTCA GAAAGATGGACGAGCTCCAGAGGCTGACCATCCGGGAGGAGAACGAAATTTCGGAGAAGATGGCGAAGGTGCAGGAATCCTCCGCGGACGCTTCCATGGT GGAGCTCTCCCACGCTATGAGCCAGATGCAGGTGTTGACGGGCGCGGATAGGGGGAAGGCGATCGAGGATCGGCTGGAGAGGGCGTTGAGTTCCAAAGAG AGGAAGTTAGCGGAGATGTTGCGGATGGCGGATGATCTACGGCTGAGGACGTGTCGGGCGATAGTTGACGAAGTCTTGACTCCCATCCAGGCCGTTCATT TCTTGATTGCTCTTGCCGAGTTGCACCTTAGGTTTCATGAATGGGGGAAGAAGAGAGACGGTCGAGTCTGA
AA sequence Show only first row Show all	>Lus10013746 pacid=23169154 polypeptide=Lus10013746 locus=Lus10013746.g ID=Lus10013746.BGIv1.0 annot-version=v1.0 MVENNSTSFKDYYDQLLVNQERDLRDLISAAKDYDNDDRRSELRGLTRRVMGHYEEYYRAKSQWAHGKVLSLLSPPWKTSLEAALTWIGGWRASMSFHII YSKSGLQLESWIQNMIQASSPGSDLADLSSEQFRKMDELQRLTIREENEISEKMAKVQESSADASMVELSHAMSQMQVLTGADRGKAIEDRLERALSSKE RKLAEMLRMADDLRLRTCRAIVDEVLTPIQAVHFLIALAELHLRFHEWGKKRDGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10013746 [exp]	0	1
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Lus10026212 [exp]	3.9	0.7779
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	4.7	0.8153
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	6.9	0.6730
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	8.5	0.6993
					Lus10015230 [exp]	9.5	0.8111
AT3G18790			unknown protein		Lus10008883 [exp]	9.8	0.6720
					Lus10010306 [exp]	10.7	0.8102
AT1G07476			unknown protein		Lus10016504 [exp]	11.5	0.7360
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	12.5	0.7898
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	17.5	0.7775

Compare expression of checked genes

Lus10013746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.