Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78650 303 / 4e-97 POLD3 DNA-directed DNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039192 [exp] 884 / 0 AT1G78650 288 / 2e-91 DNA-directed DNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387300 [exp] 413 / 3e-140 AT1G78650 330 / 1e-107 DNA-directed DNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09507 [flax] [poplar] CDC27 DNA polymerase subunit Cdc27
Representative CDS sequence Show only first row Show all	>Lus10013748 pacid=23169104 polypeptide=Lus10013748 locus=Lus10013748.g ID=Lus10013748.BGIv1.0 annot-version=v1.0 ATGGAAACCCTAGGCATCCTCGAAGACGTGGAAACCCTGGTATCAGACAAGAATCAAGTGGTTTCTTATAAGTGGCTGAGTCGCAACTTTTTGGTGCCTT CAAACGATGCTAAAAGGTTGCTCCAAGATTTTGTTGACAAACAGGGAAGCAGTTTGGACGTTGTTTATACCGTGTCTGGTTGGTTGAATAAGAATCCTCC TAGTTACAAAGTACGGCTTGTCAGTGGGCTCAAACTTGAAGAAGCAAAGCAAGATTTTGATGGTAGCTGCTCAGTTGAGGTCTATAGTGTTCAAGCTTGT ATTCCCAGGGATCCAGCTGCTCTTTGGAATATGGAGTTCATACAAGCAGAAGAGCTCATCAAGCAACCTTCCACTGATAACAATTGCTTGAGAGATAACA GGTTGTGTGGGATTGTTAATTCCTTTGTCCAGCGCATTGTTGACGGAACTTCTGTTAGCAGTTCAGCTGCTCAAACAAATAATATTGGAATTAGACGACC ATCTACAAGTTTATCAGCATGCAGAACCAGTATGGCCCGTCTTGGTGATGAAAACAAAGCTAAGCAGCTCTGTCAAATGGCTGGTCAGCAACCTTCCAAC ACGGTCGGAGAAATTAAAACTGAGAAGAATGGGAAAATAAGTTCTGATAAGAGTACCAAGCCTTGTGTAGTTGCTGAAAAAGCTCCTTCCTTACCAATTA AGGGACAAGGTGACACCAACTCATCGAAAAATGGTGGTTCATTGGCCAAGTTATGGGGGAATGCAACTGTAAAACCAAAGTTAACTAGCACACCAGCAGC CGACAATGCAGAAGCAGGAAGCTGTGCTAGGGAAACATTTGAGGACGTGATGAATGATTACGAGGATGGGGATGTCAACTTTAAGCGAGTCTCCAATAGT CTATCTGGCAGAAAAAGGAGAGTAGTTTTTGATTACTCCGATGATGAATGTGAAGATGCAGTCAATCTGAGTTCAGGGGATCTCGTGAATGGTCAAAGCA ATAAATCTGTTGCTGCCACCGACAGAATAGACGACATTGTGGTGCACGATGAAGGGAAATCGGAAGTGGGAATGGGTATCCAGAACATGAATGCTGCTTC TTCTGCTCCCGGCAAATGCAGTACTACTAAGACTTCATTTGCAGAGACAAAAGGCAGCAGCATCATGCCAAATGATGTCAAAGACAATGCAGCCTCTAAG CCAGTTCCTAGTTCTTCGAAAAGGAACAAAGTGATGAAGACGTGGATTGATGAGCGCGGCAGAGAAGTGACTGAAGTAGTATACGAGCAGGATGAGACGG AGAAGAAGAACGTTGAGAGTAAGGAGGCAGGAAATACCTCAAATGATACAACTAAAAAGGCAGCAAACAGGGAACCAGCGTCTAAGAAGTCGACCCCAGC TCCGACACATGCAGGAGGGAAAGCAGGTGGGAACAAGGCTGCAGGCAAAAGGGATCCAAAGCAAGGCAACATCATGTCCTTCTTCAAGAAAGTCTAA
AA sequence Show only first row Show all	>Lus10013748 pacid=23169104 polypeptide=Lus10013748 locus=Lus10013748.g ID=Lus10013748.BGIv1.0 annot-version=v1.0 METLGILEDVETLVSDKNQVVSYKWLSRNFLVPSNDAKRLLQDFVDKQGSSLDVVYTVSGWLNKNPPSYKVRLVSGLKLEEAKQDFDGSCSVEVYSVQAC IPRDPAALWNMEFIQAEELIKQPSTDNNCLRDNRLCGIVNSFVQRIVDGTSVSSSAAQTNNIGIRRPSTSLSACRTSMARLGDENKAKQLCQMAGQQPSN TVGEIKTEKNGKISSDKSTKPCVVAEKAPSLPIKGQGDTNSSKNGGSLAKLWGNATVKPKLTSTPAADNAEAGSCARETFEDVMNDYEDGDVNFKRVSNS LSGRKRRVVFDYSDDECEDAVNLSSGDLVNGQSNKSVAATDRIDDIVVHDEGKSEVGMGIQNMNAASSAPGKCSTTKTSFAETKGSSIMPNDVKDNAASK PVPSSSKRNKVMKTWIDERGREVTEVVYEQDETEKKNVESKEAGNTSNDTTKKAANREPASKKSTPAPTHAGGKAGGNKAAGKRDPKQGNIMSFFKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	2.2	0.8947
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	2.6	0.8740
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	4.9	0.8837
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	7.5	0.8609
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	9.2	0.8836
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	10.2	0.8807
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	13.2	0.8368
AT3G60660			unknown protein		Lus10010359 [exp]	13.2	0.8799
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	17.7	0.8825
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	19.1	0.8514

Compare expression of checked genes

Lus10013748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.