Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55230 348 / 2e-120 Family of unknown function (DUF716) (.1) AT1G55240 337 / 3e-116 Family of unknown function (DUF716) (.1) AT5G19870 310 / 6e-106 Family of unknown function (DUF716) (.1) AT1G49470 139 / 8e-39 Family of unknown function (DUF716) (.1) AT1G32120 100 / 2e-23 unknown protein AT3G01360 64 / 1e-11 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55220 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039191 [exp] 495 / 1e-178 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 146 / 1e-41 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 130 / 7e-36 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 111 / 9e-29 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 110 / 2e-28 AT1G32120 429 / 3e-142 unknown protein Lus10028821 [exp] 67 / 2e-12 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10017462 [exp] 56 / 2e-08 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10011779 [exp] 47 / 7e-06 AT1G32120 69 / 9e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008900 [exp] 397 / 1e-139 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 395 / 7e-139 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 361 / 2e-125 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 352 / 5e-122 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 137 / 2e-38 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G100700 [exp] 102 / 2e-25 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 99 / 3e-24 AT1G32120 377 / 2e-122 unknown protein Potri.005G122800 [exp] 74 / 1e-14 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10013749 pacid=23169110 polypeptide=Lus10013749 locus=Lus10013749.g ID=Lus10013749.BGIv1.0 annot-version=v1.0 ATGGGCACTTTGGTGGGTCATGTAGCACCAGGATCAGCCTTCTTCATATGGGGTTTATGGCATCTTCTCAACCATACAAAACTCCACTTCCAAAACCCAA ATACCTACCTTGCTCACCCATGGTTCCCGACTTCAAAGTTCAAATACTTGGAGCTCTTGCTCATCATGATGGTGAGCTCCATCTCAATATCGATGGAGCT CTTCATCGGGCCCGAAAGGCACCAGCCGCTCGATCCTGATGGCACAATCCCGTCGAACCACCTTCACAACTTCGAGCACTCTTCAATCTCCATGACTTTC TTCACTTACGCTGCTCTAGCCATCGCGCTTGATAGGATCGGACCGAAGTCCAAATTCGGCATGACCCAATTGGTAGGAGCTGTAGCGTTCGCGCAACAGC TCTTGATGTTCCGCCTCCACTCTTCTGACCACATGGGCGTCGAAGGACAATACCATTTGCTTCTCCAATCCGCCATTTTCGTCTACCTGGTTACCACCCT CATGGGAATCAGCCTTCCTCGCAGCTTTATGGTCAGCTTCATGAGGTCCGTCAGCATTGTCTTTCAGGGTGTGTGGATGGTGGTGATGGGCTATGCACTT TGGACACCTTCTCTAGTAGCAAAAGGGTGCTACATCAACCAAGAGGAAGGGCACCGAGTGGTGAGGTGCCAAGGTGAACAAGCTCTCCACAGGGCCAAAT CTCTTGTGAACATCCAATTCAGCTGGATGTTGATCGGCATCACAGCTTTTGCTGTGGGTTTCTACTTGATGATGCACAAAGCTTACGGCCGAAACGTTGA CTACACATCGTTGACCACACCGGTTTTAGAAGAAGAAGAAGAAGATGATCATGATGTTGAATCGCAGAGGAAGACACAGAGTAGTAGTTTCATTCAGATG GGGAAGAGCTGGGGGAAAGTTGACATTGATAGGTAA
AA sequence Show only first row Show all	>Lus10013749 pacid=23169110 polypeptide=Lus10013749 locus=Lus10013749.g ID=Lus10013749.BGIv1.0 annot-version=v1.0 MGTLVGHVAPGSAFFIWGLWHLLNHTKLHFQNPNTYLAHPWFPTSKFKYLELLLIMMVSSISISMELFIGPERHQPLDPDGTIPSNHLHNFEHSSISMTF FTYAALAIALDRIGPKSKFGMTQLVGAVAFAQQLLMFRLHSSDHMGVEGQYHLLLQSAIFVYLVTTLMGISLPRSFMVSFMRSVSIVFQGVWMVVMGYAL WTPSLVAKGCYINQEEGHRVVRCQGEQALHRAKSLVNIQFSWMLIGITAFAVGFYLMMHKAYGRNVDYTSLTTPVLEEEEEDDHDVESQRKTQSSSFIQM GKSWGKVDIDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	1.0	0.9912
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	1.4	0.9848
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	2.4	0.9825
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	3.3	0.9726
					Lus10000527 [exp]	3.5	0.9812
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	3.5	0.9724
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	6.3	0.9798
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	7.3	0.9742
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	7.9	0.9774
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	10.0	0.9665

Compare expression of checked genes

Lus10013749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.