Plant FIBer expression Database

Lus10013750 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G32930 278 / 1e-94 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039189
[exp]
346 / 1e-121 AT3G32930 299 / 2e-103 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G216700
[exp]
292 / 6e-100 AT3G32930 300 / 3e-103 unknown protein
PFAM info
Representative CDS sequence
>Lus10013750 pacid=23169038 polypeptide=Lus10013750 locus=Lus10013750.g ID=Lus10013750.BGIv1.0 annot-version=v1.0
ATGATCCTTTCTCTTGTACACTCCTCCTGCTCTACTTCTTCCTCCACCTTTCAACCCAGACTCTACACTTCCATCTCCCAACCACTCCCGAATTCCACTT
CCTACTTGCTCCCGAAATCGCTACTCCCCGGCCACCACTCCTTGAAGAAATGGCTCTATCTCAGCAAGCGATCCTACTACTGCAGGACTCGGAACTTCAC
CGCTAACGCTATTCAGGCTTCCTTGCTCGAGGCCCCTGTCCTGTGGGCTGGCCGGGTTTTCGTTTTCTATGCGCTTTTGAGGGTCGGTTTAGCTGGATCC
AAGTCCAATCCATTTGTGTCCGATTTAGTTGGGGAAAGAGGTGGCAGGGGTGCTGCTGGTATTGCTGAAGCTGGTGATTTCGGGTTCTCTAAGTTGCTTC
AGTCCATTACAGGAGACCCTGATAAAGAAGCAGCTGATAAGAGGAAGCTAGTGAGCAAATGGCATCCCACCACTAAAGGTACGCTTAGGAGGAACTACAG
GGTGCCATCGAAAACTGAAGGAAGACGTCTCCTTAGAGCAGTTGCAGCCTTGCTAGCCGAGGATGATCACTTCGTAGATGCCACTTCCCACAAGGGGTGC
CAAATAAGAAGGGAGAGTGCACACGGTGAGAGTGTGTGCTGTAACAACGTAAGGGCTCTTTTCGACGAGCTGCCGACGCCTCACCTGATCGTCGAAATCA
CTCCTTTTCCTGTCGGATCTTTGACCGAGAAGGACTATCTCAAGGCTGAAAAGCTAGAAAGAGTGCTTCGGTCTGGCCCTTCTGTCTGA
AA sequence
>Lus10013750 pacid=23169038 polypeptide=Lus10013750 locus=Lus10013750.g ID=Lus10013750.BGIv1.0 annot-version=v1.0
MILSLVHSSCSTSSSTFQPRLYTSISQPLPNSTSYLLPKSLLPGHHSLKKWLYLSKRSYYCRTRNFTANAIQASLLEAPVLWAGRVFVFYALLRVGLAGS
KSNPFVSDLVGERGGRGAAGIAEAGDFGFSKLLQSITGDPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKTEGRRLLRAVAALLAEDDHFVDATSHKGC
QIRRESAHGESVCCNNVRALFDELPTPHLIVEITPFPVGSLTEKDYLKAEKLERVLRSGPSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G32930 unknown protein Lus10013750
[exp]
0 1
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10019939
[exp]
3.5 0.6856
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Lus10038868
[exp]
4.7 0.6978
Lus10030382
[exp]
9.2 0.6945
AT2G33585 unknown protein Lus10016044
[exp]
10.6 0.6485
AT4G40030 Histone superfamily protein (.... Lus10012757
[exp]
10.8 0.6940
AT4G03420 Protein of unknown function (D... Lus10031632
[exp]
15.9 0.6516
AT4G08980 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5... Lus10036483
[exp]
17.0 0.6622
AT3G15360 ATHM4, ATM4, TR... ARABIDOPSIS THIOREDOXIN M-TYPE... Lus10014798
[exp]
22.0 0.6831
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10043137
[exp]
24.4 0.6381
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10013785
[exp]
28.1 0.6589

Lus10013750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.