Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G32940 212 / 1e-59 RNA-binding KH domain-containing protein (.1) AT5G51300 88 / 9e-18 splicing factor-related (.1.2.3) AT3G08620 43 / 0.0006 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039188 [exp] 1163 / 0 AT3G32940 255 / 2e-75 RNA-binding KH domain-containing protein (.1) Lus10038932 [exp] 85 / 9e-17 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216800 [exp] 375 / 1e-118 AT3G32940 249 / 5e-73 RNA-binding KH domain-containing protein (.1) Potri.001G008700 [exp] 333 / 2e-102 AT3G32940 236 / 4e-68 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 86 / 4e-17 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 86 / 5e-17 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013751 pacid=23169144 polypeptide=Lus10013751 locus=Lus10013751.g ID=Lus10013751.BGIv1.0 annot-version=v1.0 ATGGCTATGGAAATTGAGCAGTCGTCAGTTTTGGAACTTCATAATGACAACACACCTACGAGTTCGTCTATTCCTTCAACAAGTGGACCAAAGGTCTCCA TTTTTGCAGCAAAATCTGGATTTGTGATTCCCAAAAACAAGCTTTCGGGTTCGCTTGTTCCAATCTTTAGAGGCAGTAAGAAGCTTGCTAGCAGTGATGG AGTCAGTCAAGAAAGCAACAATGACCACCAAAGGAAGACGAAATGGGGACCTGATCTGACACAAGATGCTGCTGTTAAGAAGGGCAGAGTTTTAGCCTAT CAGACTCGAGTAGATCAAATCGCACAACAGCTGGAAAGGGGGATTCTTGAGCTTGGTGATCATAAAGACTCAGAAGTCTCTGATGAATATGTTGATTTAA AGACTTCCAGACCACACCATGAGGCTAAGACTCTGGAAACTTTGGAACTTGAGAGGCAGGAAGTCATTGGTAATTTGCTAATTCACAGCAAGAGTGAAAT ACTTAAATTGAATCCAAGTTACAAGGCTCCACCTGACTATAAGCCTTCGCTTAAGGAAGCTGCAGTTGTTATCCCTGTGAAAGATCATCCTGAACACAAT TTCGTTGGTCTCATATGTGGCCCTGGAAATGAGACTCTGAAACGATTGGGGAAGGAAACTGGGACAAAACTGAAAGTACATGGGATCAAGTCTGGTACTG AGGAGAAGGTTGAAATTTCAACCTCTGGTGCGAAGAATGAAAGCGAGGCTACTTTTGATGAGTTGACTGTGCTTGTATCTGCCGACACATTTGAGAAAGT GGATTCTGCAGTGTCCGTTATTGAATTACTAATCTCCTCAATATCGGGAAATCTTGTTGCTGGGGATAATGTAGGTAATCAGAATCCACAGACACCTGTT TCTGCAGTGCCTGATGTCGGTAATCAGGAAGCCACACATCCACCGCGCGCAGGACCTTCGCAAGGTGAATTTCGGCCCCAAGAATCATCGTATCCTGGAG CCCCACTACCTCCTGGTCCGGCATATCCACCATCCTCTAGCGTCATTTCTTCTCAATTTCTTTCAGCACCAATGTCTAACAATCCTGCAGATGCTCACTT GCCATTCTTCAATACATCCACACTGCCATCTCACATGGGTCCTCCATCAACTCCATCTATGTTCACTTCTATTCCTGTCCAGTCACATCCAACTAGGTAT CCCTCGCTGAACCCTTATCCACCGAGAAATTTCCTGATGCAAGGCTCCCAACCTTTCCCAATGCAGGGAAATAGTTTAGCCGCACCTCCTTACAATAGTA ACCAACGCCCACCTAGTGGACTGCATCCGATCCCAATGTCCTCGCAACCGCAACCTTCGTTCGTTCCTCAAGCACCTCTCGGAGACAATCCTTCTGCAGG ACAAATGCTTTCGCGGCCAGGTTTTGCTTCTCATGTTCCATATTCAAATGCTTCTGGACCCAATTTTGGTTTTCCGGGAAATGCTCAACCCAGGCAACCA ACTCTTCAGTTGCCCAGCAGCCAAATGGGCCATCATTCTGCCGCCCCAAGCTCCTTTCCTGGTCAACCAGCTCAGCCGTTTGCTCGGCCATCTAGGCCAA ATTTTCCTGCACATTTCTCTGGTTCGGAAACTCAGCAACCTATATCGGCTGCTGCAAGACCAAATGAACATCCTGGGATCATTCCTGGTACCAGACCGAA TTTCTTTCCCACGAGACAGCTTTCTGTAGCAATTCCTCCGCAGCATCCTGTTCGTGGTGATTTTGCGTTTCAGATGCGCCATCCACCAAATATGAACACT CTGACCAGCAGGCCAACGCATGGTCCAGCTGCACAAGCACCATCTTTCCCACCTTTCCGGCCAAACTCGAATTTTCATCCTGGCAGCAGCCATGAGTTCC CAAGACCTCAGACGGGTCAGCCTCGTTTCGATTACCCTTTCAGTGGGAACCTTGCTGGAGCTTCAGTCCCACCCAGATTTGCAGCATTTCGAGATGGCAA TCCACAGATGATGTCTAGGAGCATGGTCCCCCGGGCAGGTTTTCCTCAGATGAATCTGCCTCGAGAGTTAAGAGATCCGAATAAACAGCTCCGTCTGGAT TTTGCTCTCGGATCTTCTAGGCCTGATGCCAACCTTGGACGGCAGCAAGTTTATGACCCGTTCTCACCCTCTGCTTCTCAGCAACCTGGAATGGGAAGAA AAGCAGACAACGATCCCGAGTACGAAGATTTGATGGCGTCAATGGGTCTCAAGTGA
AA sequence Show only first row Show all	>Lus10013751 pacid=23169144 polypeptide=Lus10013751 locus=Lus10013751.g ID=Lus10013751.BGIv1.0 annot-version=v1.0 MAMEIEQSSVLELHNDNTPTSSSIPSTSGPKVSIFAAKSGFVIPKNKLSGSLVPIFRGSKKLASSDGVSQESNNDHQRKTKWGPDLTQDAAVKKGRVLAY QTRVDQIAQQLERGILELGDHKDSEVSDEYVDLKTSRPHHEAKTLETLELERQEVIGNLLIHSKSEILKLNPSYKAPPDYKPSLKEAAVVIPVKDHPEHN FVGLICGPGNETLKRLGKETGTKLKVHGIKSGTEEKVEISTSGAKNESEATFDELTVLVSADTFEKVDSAVSVIELLISSISGNLVAGDNVGNQNPQTPV SAVPDVGNQEATHPPRAGPSQGEFRPQESSYPGAPLPPGPAYPPSSSVISSQFLSAPMSNNPADAHLPFFNTSTLPSHMGPPSTPSMFTSIPVQSHPTRY PSLNPYPPRNFLMQGSQPFPMQGNSLAAPPYNSNQRPPSGLHPIPMSSQPQPSFVPQAPLGDNPSAGQMLSRPGFASHVPYSNASGPNFGFPGNAQPRQP TLQLPSSQMGHHSAAPSSFPGQPAQPFARPSRPNFPAHFSGSETQQPISAAARPNEHPGIIPGTRPNFFPTRQLSVAIPPQHPVRGDFAFQMRHPPNMNT LTSRPTHGPAAQAPSFPPFRPNSNFHPGSSHEFPRPQTGQPRFDYPFSGNLAGASVPPRFAAFRDGNPQMMSRSMVPRAGFPQMNLPRELRDPNKQLRLD FALGSSRPDANLGRQQVYDPFSPSASQQPGMGRKADNDPEYEDLMASMGLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	2.6	0.8575
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	5.1	0.8535
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	5.5	0.8174
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	8.0	0.8105
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	12.3	0.8061
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	12.4	0.7744
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	15.7	0.7906
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	15.7	0.8284
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	17.2	0.8329
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	17.7	0.7885

Compare expression of checked genes

Lus10013751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.